Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54670 1466 / 0 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT5G48600 152 / 6e-37 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT5G62410 114 / 2e-25 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT3G47460 86 / 9e-17 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT2G27170 67 / 1e-10 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT5G61460 55 / 5e-07 SMC6B, ATRAD18, MIM STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07660 54 / 7e-07 SMC6A structural maintenance of chromosomes 6A (.1) AT5G15920 48 / 4e-05 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022923 [exp] 2198 / 0 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10021268 [exp] 1032 / 0 AT3G54670 849 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013583 [exp] 509 / 7e-171 AT3G54670 410 / 2e-133 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013582 [exp] 390 / 4e-127 AT3G54670 292 / 2e-91 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013581 [exp] 171 / 2e-49 AT3G54670 167 / 4e-51 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10005240 [exp] 145 / 9e-35 AT5G48600 1804 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10030681 [exp] 141 / 1e-33 AT5G48600 1723 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10027215 [exp] 110 / 5e-24 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10036169 [exp] 62 / 3e-09 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224900 [exp] 1587 / 0 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.017G083200 [exp] 132 / 1e-30 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.003G108400 [exp] 114 / 3e-25 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.001G125000 [exp] 89 / 2e-17 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.009G155200 [exp] 87 / 5e-17 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.001G262600 [exp] 50 / 2e-05 AT5G15920 1427 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Potri.003G107700 [exp] 47 / 7e-05 AT5G61460 1237 / 0.0 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02463 [flax] [poplar] SMC_N RecF/RecN/SMC N terminal domain CL0023 [flax] [poplar] PF06470 [flax] [poplar] SMC_hinge SMC proteins Flexible Hinge Domain
Representative CDS sequence Show only first row Show all	>Lus10024895 pacid=23178893 polypeptide=Lus10024895 locus=Lus10024895.g ID=Lus10024895.BGIv1.0 annot-version=v1.0 ATGCCTGCGCTAGCCTCCCCGGGCAGAATTCTCCGATTGGAGATGGAGAATTTCAAGTCCTACAAGGGCTTCCAGTCAATTGGTCCTTTCAAGGACTTCA CCGCCATCGTTGGCCCCAACGGATCCGGCAAGTCCAACTTGATGGACGCAATCAGCTTCGTCCTCGGCGTCCGTACGGGCCAGCTCCGTGGTGCTCAGCT CAAGGATCTCATCTACGCTTTCGACGACAAGGATAAGGAGCAGAAGGGCCGGAAAGCATTTGTGCGGCTGGTGTACCTGCTTGCTAGCGGGACGGAGCTT CACTTCACCCGCGGAATCACCAGCGCTGGTGCGAGCGAGTACCGCATCGATGGTAGGGTTGTTAATTGGGATGAGTATAACGGGAAGTTAAGGTCTCTGG GGATTCTTGTGAAGGCCAGGAACTTCTTGGTTTTTCAGGGGGATGTGGAGTCTATTGCATCCAAAAACCCCAAGGAGTTGACTGCGTTGCTTGAGCAAAT TTCTGGGTCGGGGGAATTCAAGAGGGAGTACGAGGATCTCGGTGAACAGAAAGGCAGGGCGGAAGAGAAAACAGCACTTGCCTATCAGAGGAAAAGAGCT ATTGTAGGGGAAAGGAAGCAGAAGAAAGCTCAGAAGGAGGAAGCTGAGAAGCATAATCGTTTGCAAGCTGAACTGAAATCTTTGAAGCGAGAACATTTCT TATGGCAATTGTTCACCATAGACAAGGACGTTAAAGAGTTAAATGACAAACTTGATGCCGAAACGACGGAGCGTGAAGGTGTTTTGCAGGAGCTTGTTAA GTTTGAAAAAGAAGCTTCTACCAAGAAGAAGGAGCAAGCCAAGTTCCTGAAAGAGATTACCCTATTAGAAAAGAAGATTGCTGAGAGAAGCTCCAAGCTT GAAAAACATCAACCTGAGCTTCTGAAACTAAACGAGGAAATGAAGCGCTTAAGTTCAAAAATTAAGAGCACCCGTAAGGACCTTGATAGGAGAAAAGAAG AACGGAGGAAAAATACAGGCGAAGTACAAGAATTACAGAGTGGCATAGAGGATCTAATGGCGAAACTGAAGGATCTGACTGAGCGAAGCAAAGACAGTAG TGGAAAGCTTCCTCTGGCTGATAGTCAACTGGAAGAATACTTTAAAATCAAAGAGAATGCTGGGATGAAAACCAGCAGGCTGAGAGATGAAAAAGAGGTT TTGGACAGGCAACAACACGCTGATATGGAAGCTGAAAAAAATTTGGAAGAGAATCTTCAACAATTGAGAAATCGTGAACAGGAACTGGCTTCACAGGAAG AGCAAATACGAACAAGACTTGAAAAGATACTCGACACTTCTGCAAAACAGAAAGATGAGGTGGCAGAGTTGAAAAAAGAATTGCGTATGATACAAGATAA ACATCAGGATACCAAGAACAAGCACCAGAACTTGAAGTCCAAAATTGGAGAAATAGACAACCAACTGCGCGAGCTGACAGCTGATAGATTTGAGAATCAG AGGGATGCTCGGTTGTCCGAAACAGTGGAGACTCTCCAACGGCTCTTCCAGGGAGTTCATGGACGCATGACTGGCCTTTGTAGACCAAAGCAAAAGAAAT ATAATTTGGCCGTCACTGTCGCTATGGGCAGATTCATGGATGCTGTGGTGGTTGAGGATGAAAATACAGGAAAAGAATGTATCAAGTATTTGAAACAGCA GAGGCTTCCTCCTATGACCTTTATACCCCTTCGGTCGATTCGTATAAAGCCAGTCCCTGAATGGATGCGTACCTTAGGGGACTTAACTGTTCTCACGTTT GATCCTGCGCTGGAGAAGGCTATACTTTATGCTGTTGGAAATACTATGGTTTGTGATGATCTTGATGAAGCAAAGAAACTTGGATGGGATGGAAATGGAG AGAGAATTAAAGTTGTAACTGTTGATGGGACTCTCCTTACTAAGTCTGGAACAATGACTGGTGGTACTAGTGGTGGAATGGAAGCTAGGTCAACACAGTG GGATGATAAAAAGATCGAAGGGTTGAAGAAGAAGAAAGAACAATTTGAGTCTGAATTAGAGGAGCTGGGGTCACTTAGAGAAATTCATTTGAGAGAGTCT GAAGCATCTGGCAGGATCAGTGGTCTTGAAAAGAAAATCCAGTATGCAGAAATTGAGAGGAGAAGTATTGAGGACAAGCTCAAGAACTTGAAAAAGGAGA AGAAAACGGTCAAAGAAGAAATTAGTCGTCTGAGTCCAGAACTGCGGAAGTTGAAAGGTGCTATTGAAAAGAGAGGTGATTCCATAAGGACGGTGGAGGA TAAAATAAATAAGGTTGTTGATCGGATTTATGAAGATTTCAGTAGGAGTGTCGGTGTGGCAAATATACGCGAATATGAAGAGAACCATCTCAAGGCTGCC CAACATGTAGCTGAGGATGTAGCTGAGGAAAGGCTTAGTTTAAGCAACCAGTTGTCGAAGTTGAAGTACCAATTGGAGTATGAGCAAAAGCGGGATGCAG GTGCGAGGATTAGAAAGCTGGAGTCTTCTCTAAATAATTTAGAGAATGAACTGAAACATTCTGAGAAAAAAGAGGCAGAAGTGAAGTCAACCGTAGAGAA AACAACAAGTGAGATTGATAGCTGGAAGGAAGAAGTGCAAGGGTGGAAATCCAAAGCAGAAGACTGTGACAAGGAAATTCAGGATTGGAAGAAGAAAGCT TCAGATGTTACAACCAAAATTTCTAAGCTTAGCCGTACTATAAGCTCCCAGGAGGGGCAGATTGAGCAGCTCTTGTCTCGCAAGCAAGACATAGTGGAAA AGTGTGAATTGGAACATATAAGCCTTCCAACTATTTCTGATCCCATGGAGACTGATTCTGCAGTTCCAGGCCCATTCTTCGACTTCAGTGAGCTGGATAG ATCTCTTCTTCAGGATAAGAGGGCTGCGGATAGAGAGAAAACAGATCAGGAATTTAAGAAAAATATGGACGCAAAAATATCTGAAATTGAAAGAACTGCT CCACACTTGAAGGCCCTAGAGCAGTATGAGGCCTTGCTGCAGAAGGAAAGGGAAGTATCTAAAGAGTTTGACGTAGCCAATAAGGAGGAGAGTCAGGTGG CTGATGCTTATAACTCTGTTACAAAAAAGAGATGTGACTTGTTCATGGAAGCTTTCAATCACATATCAAAGATAATTGATAAGATTTACAAGCAATTAAC AAAGAGCAACACACATCCTCTTGGGGGGACAGCATACCTGAACCTGGAAAATGAAGATGAGCCATACTTACACGGCATCAAGTTCACAGCCATGCCCCCA ACAAAACGTTTCCGAGATATGGAACAACTGTCTGGCGGTGAGAAAACTGTTGCAGCACTTGCGTTGCTTTTCGCCATCCACAGCTATAGGCCGTCGCCAT TTTTCATATTGGATGAAGTCGACGCAGCGCTGGATAACTTAAACGTCGCCAAAGTTGCTAGGTTCATTCGCTCGAAATCTTGTCAAGAGACTCGGATGAA TCACGAAAACGAACAAGAAGAAGCTAATCTTGACAACGAGAATGGAACTGGTTTCCAGAGCATTGTGATCTCTCTGAAAGACAGCTTTTACGACAAGGCC GAAGCTCTGATCGGGGTTTATAGAGAAGCCGATCGAGGCTACTCAAGAACTCTGACGTTCGACCTGACCCGTTACCGCGAATAG
AA sequence Show only first row Show all	>Lus10024895 pacid=23178893 polypeptide=Lus10024895 locus=Lus10024895.g ID=Lus10024895.BGIv1.0 annot-version=v1.0 MPALASPGRILRLEMENFKSYKGFQSIGPFKDFTAIVGPNGSGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDKDKEQKGRKAFVRLVYLLASGTEL HFTRGITSAGASEYRIDGRVVNWDEYNGKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSGEFKREYEDLGEQKGRAEEKTALAYQRKRA IVGERKQKKAQKEEAEKHNRLQAELKSLKREHFLWQLFTIDKDVKELNDKLDAETTEREGVLQELVKFEKEASTKKKEQAKFLKEITLLEKKIAERSSKL EKHQPELLKLNEEMKRLSSKIKSTRKDLDRRKEERRKNTGEVQELQSGIEDLMAKLKDLTERSKDSSGKLPLADSQLEEYFKIKENAGMKTSRLRDEKEV LDRQQHADMEAEKNLEENLQQLRNREQELASQEEQIRTRLEKILDTSAKQKDEVAELKKELRMIQDKHQDTKNKHQNLKSKIGEIDNQLRELTADRFENQ RDARLSETVETLQRLFQGVHGRMTGLCRPKQKKYNLAVTVAMGRFMDAVVVEDENTGKECIKYLKQQRLPPMTFIPLRSIRIKPVPEWMRTLGDLTVLTF DPALEKAILYAVGNTMVCDDLDEAKKLGWDGNGERIKVVTVDGTLLTKSGTMTGGTSGGMEARSTQWDDKKIEGLKKKKEQFESELEELGSLREIHLRES EASGRISGLEKKIQYAEIERRSIEDKLKNLKKEKKTVKEEISRLSPELRKLKGAIEKRGDSIRTVEDKINKVVDRIYEDFSRSVGVANIREYEENHLKAA QHVAEDVAEERLSLSNQLSKLKYQLEYEQKRDAGARIRKLESSLNNLENELKHSEKKEAEVKSTVEKTTSEIDSWKEEVQGWKSKAEDCDKEIQDWKKKA SDVTTKISKLSRTISSQEGQIEQLLSRKQDIVEKCELEHISLPTISDPMETDSAVPGPFFDFSELDRSLLQDKRAADREKTDQEFKKNMDAKISEIERTA PHLKALEQYEALLQKEREVSKEFDVANKEESQVADAYNSVTKKRCDLFMEAFNHISKIIDKIYKQLTKSNTHPLGGTAYLNLENEDEPYLHGIKFTAMPP TKRFRDMEQLSGGEKTVAALALLFAIHSYRPSPFFILDEVDAALDNLNVAKVARFIRSKSCQETRMNHENEQEEANLDNENGTGFQSIVISLKDSFYDKA EALIGVYREADRGYSRTLTFDLTRYRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	0	1
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	1.4	0.9184
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	2.4	0.9052
AT4G21660			proline-rich spliceosome-assoc...		Lus10018475 [exp]	2.8	0.8859
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	3.0	0.9231
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	4.2	0.8776
AT1G50410			SNF2 domain-containing protein...		Lus10041008 [exp]	6.9	0.8835
AT5G44180	HD		Homeodomain-like transcription...		Lus10039870 [exp]	7.5	0.8796
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	8.1	0.8839
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10020893 [exp]	8.9	0.8772
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	11.7	0.8610

Compare expression of checked genes

Lus10024895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.