Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06210 386 / 7e-134 ENTH/VHS/GAT family protein (.1.2) AT5G16880 241 / 6e-77 Target of Myb protein 1 (.1.2.3) AT4G32760 109 / 4e-26 ENTH/VHS/GAT family protein (.1.2) AT5G01760 103 / 2e-24 ENTH/VHS/GAT family protein (.1) AT1G76970 96 / 5e-22 Target of Myb protein 1 (.1) AT1G21380 94 / 4e-21 Target of Myb protein 1 (.1) AT3G08790 93 / 1e-20 ENTH/VHS/GAT family protein (.1) AT2G38410 92 / 3e-20 ENTH/VHS/GAT family protein (.1) AT5G63640 77 / 3e-15 ENTH/VHS/GAT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022922 [exp] 637 / 0 AT1G06210 369 / 2e-126 ENTH/VHS/GAT family protein (.1.2) Lus10013788 [exp] 241 / 6e-77 AT5G16880 509 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10039144 [exp] 234 / 5e-74 AT5G16880 516 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10005924 [exp] 231 / 6e-73 AT5G16880 541 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10040912 [exp] 229 / 3e-72 AT5G16880 539 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10022753 [exp] 109 / 5e-26 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10014155 [exp] 107 / 2e-25 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 106 / 4e-25 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10022140 [exp] 101 / 2e-23 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038000 [exp] 462 / 3e-163 AT1G06210 409 / 7e-142 ENTH/VHS/GAT family protein (.1.2) Potri.005G225000 [exp] 455 / 1e-160 AT1G06210 402 / 6e-139 ENTH/VHS/GAT family protein (.1.2) Potri.013G082500 [exp] 253 / 1e-81 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.019G050000 [exp] 253 / 2e-81 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.016G131900 [exp] 112 / 2e-27 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 103 / 3e-24 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.018G039100 [exp] 100 / 4e-23 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.006G241000 [exp] 100 / 6e-23 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.T005401 [exp] 70 / 3e-13 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 70 / 3e-13 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10024896 pacid=23178903 polypeptide=Lus10024896 locus=Lus10024896.g ID=Lus10024896.BGIv1.0 annot-version=v1.0 ATGGACAAGCTGAAATTGGCTGAATGGGGTGAGAAATTGAGGACTGGCGGGGCTCAGATGAGTCGGGTTGTTAGCGATAAGATGAAGGAAATTCTGCAGG CACCTACTCCGGAATCGAAGATGGTCGACGATGCTACGGCCGAGACCTTGGCAGAGCCGAACTGGGGATTGAATTTGAGGATATGTGCCCTGATCAACAG CGAGGAGTTTAATTGCGCAGATGTTGTGAGGGCCATCAAAAAGAAGATATCTGGCAAGAGTGAGGTGGGGCAGAGGTTGAGCCTTGATTTGCTCGAGGCC TGTACAATGAACTGCGAGAAAGTGTTCTCTGCAGTTGCTTCCGAGAAGGCATTGGATGAGATGATCAAGTTGATTGACAACCCTCTGTCTGATACTGAGA ACCGGAGCCGTGCAATGCAGTTAATTGCAGCTTGGGGGGAATCGGAGGATCTCGAGTATCTGCCAGTTTTTCGTCAGACTTACATGACCTTGAAACAAAG AAGCGTGTTGCCTGAGGGAAATGTTGCACCGGTGGAGAACTCTCTCGAGTCGTATTTCCAGCCTATGCCTCCTCCTGGAAGCTATCCTGTTCCTGATTCT GGATTGCCTGGATTGGGACAAGGCACCTTCCCACAAAACTACCTATCAACGGAGGAAAAGAATGAAGTCCTCGTGACAACAAGGAACAGCCTCGAACTTC TCTCTAGCATTTTAAATGCAGAAACAGAGCCAAAACCCATCAAGGAGGATCTAACGGTGAGCTTGTACGAGAAGTGCAAGCAGTCGCAGCCTGCTGTGCA GCAGCTCATAGAGAGCACCACCGATGACGAGGCAATGCTGTTTGAGGCCCTCAATCTCCACGACGAGCTTCAGCGAGTCATCTCCCAGTATAACGATCTC GAAGCTGGCCTAAACTCCGCGGAGCAATCGGTTAAATCTCCCAAAAGCTCGGAGCCTGCTCCTGCTGTTATTACTGTTATTCCGGGGAGACAGGATGGGG GCAAGTGA
AA sequence Show only first row Show all	>Lus10024896 pacid=23178903 polypeptide=Lus10024896 locus=Lus10024896.g ID=Lus10024896.BGIv1.0 annot-version=v1.0 MDKLKLAEWGEKLRTGGAQMSRVVSDKMKEILQAPTPESKMVDDATAETLAEPNWGLNLRICALINSEEFNCADVVRAIKKKISGKSEVGQRLSLDLLEA CTMNCEKVFSAVASEKALDEMIKLIDNPLSDTENRSRAMQLIAAWGESEDLEYLPVFRQTYMTLKQRSVLPEGNVAPVENSLESYFQPMPPPGSYPVPDS GLPGLGQGTFPQNYLSTEEKNEVLVTTRNSLELLSSILNAETEPKPIKEDLTVSLYEKCKQSQPAVQQLIESTTDDEAMLFEALNLHDELQRVISQYNDL EAGLNSAEQSVKSPKSSEPAPAVITVIPGRQDGGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10024896 [exp]	0	1
AT1G61040		VIP5	vernalization independence 5, ...		Lus10018476 [exp]	1.4	0.9024
AT4G27310	CO		B-box type zinc finger family ...		Lus10031593 [exp]	2.4	0.8626
					Lus10010972 [exp]	2.8	0.8972
AT2G19270			unknown protein		Lus10020014 [exp]	6.1	0.7805
AT4G34630			unknown protein		Lus10028793 [exp]	8.1	0.8126
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10024687 [exp]	10.0	0.7981
AT1G53900			Eukaryotic translation initiat...		Lus10037451 [exp]	12.0	0.8064
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	12.0	0.8328
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025406 [exp]	12.4	0.8293
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	12.5	0.8475

Compare expression of checked genes

Lus10024896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.