Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06190 99 / 2e-23 Rho termination factor (.1.2) AT2G31150 74 / 8e-15 ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism (.1) AT4G18740 42 / 0.0004 Rho termination factor (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022920 [exp] 462 / 3e-164 AT1G06190 132 / 3e-35 Rho termination factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G037800 [exp] 189 / 2e-56 AT1G06190 193 / 6e-59 Rho termination factor (.1.2) Potri.005G225200 [exp] 132 / 6e-35 AT1G06190 145 / 1e-40 Rho termination factor (.1.2) Potri.004G059300 [exp] 44 / 5e-05 AT4G18740 99 / 3e-25 Rho termination factor (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0306 [flax] [poplar] HeH PF07498 [flax] [poplar] Rho_N Rho termination factor, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024898 pacid=23178902 polypeptide=Lus10024898 locus=Lus10024898.g ID=Lus10024898.BGIv1.0 annot-version=v1.0 ATGCCAGCTGAAAGTTATGGGCCACTAGATGGTAGCTGTCTTTCCCTCTCAGGGTTTTCACAGAGACCGGCAGCTGTATGTGTTTCTCCCTGTTCCTCTC ACGGGGGATTCTTTTCTCATATCAAGATTAGATCAACGGGGACACCATCTTTCATATGCATGGCAAATTCAGGCGGTCACAGGACAAACCCGGATTTCTC AAGGCAAGGTAAGCAAGGATTCTCGCGTGGTAATAACAGGTACAGTCAAAATGAAGATAGAAACATGGACGATGACGACGATGATGAAGACGAACTATTG ATGCCTTTAAAGAACGGTGTCTACTTCAACCAAAAATCCCAAAGCACTGCAGCTCCAGGTGAAAGAGAGAAGGAGATAATCGAGCTGTTCAAGAAGGTCC AGGTCCTGCTCAGAGAAAAGGCTGGGGTCAAAACAGAGAAAAAGGTTGAACCTTCCCCACAAGGGAAAGTTTCCAAGGAGACTGAAACAGTTGGCTCCCT CCTTAATCTTCTGCGGAAGCATAGCAACGTTAGCAAGGAAGATTCGTCCTCGGATCATCGGAAAAACAGCAGCTTTAGCAAGGAAGACACGTCCGGGGAC CAGCTGGAGCAGACCTGGGGAAATAATGAAGATTACAAAAGCTCAGGCAGTGGTGGTCTTCACTCGGTCAACAAATACAGCAATGGCGCTGTGGATTCTA GCTCGGCTCCCTTCACACGACCACCCTCGAGTTTCCGGAAACGGACCCCATTCATGAGGACGACAATGCCTCCTCCTCCTCCTCCTCAGGTTGATTCAAG CAATGAAGAGGACCATGTTACATCTAAGAGCCGTTCGAACTCGAGCGGGGCCAAAAAAGAGGAATATGAGGTTATTCCAGATGCCATACATGAGCCGGAA GATGATCACGGATCAGAAATGCTACTGGCTGAGCTGGACGACGACAGTGGTGAAGAAGATGAAGAGCACGAGGCAGATGATGTGGAGGATCTGAGTTCGT TGAAGATCACAGAGCTGAAGCAACTGGCGAAGGCCCGTGGCATCAAAAGGTATTCAAAGATGAACAAAAGTGAGTTGGTGGAGGTTCTTAGTGGTGGATC TTCAGACTGA
AA sequence Show only first row Show all	>Lus10024898 pacid=23178902 polypeptide=Lus10024898 locus=Lus10024898.g ID=Lus10024898.BGIv1.0 annot-version=v1.0 MPAESYGPLDGSCLSLSGFSQRPAAVCVSPCSSHGGFFSHIKIRSTGTPSFICMANSGGHRTNPDFSRQGKQGFSRGNNRYSQNEDRNMDDDDDDEDELL MPLKNGVYFNQKSQSTAAPGEREKEIIELFKKVQVLLREKAGVKTEKKVEPSPQGKVSKETETVGSLLNLLRKHSNVSKEDSSSDHRKNSSFSKEDTSGD QLEQTWGNNEDYKSSGSGGLHSVNKYSNGAVDSSSAPFTRPPSSFRKRTPFMRTTMPPPPPPQVDSSNEEDHVTSKSRSNSSGAKKEEYEVIPDAIHEPE DDHGSEMLLAELDDDSGEEDEEHEADDVEDLSSLKITELKQLAKARGIKRYSKMNKSELVEVLSGGSSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	0	1
AT1G06190			Rho termination factor (.1.2)		Lus10022920 [exp]	1.0	0.9442
AT5G01590			unknown protein		Lus10012500 [exp]	3.2	0.9418
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10011129 [exp]	5.5	0.9227
AT5G41460			Protein of unknown function (D...		Lus10017514 [exp]	5.8	0.9023
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	6.0	0.9251
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	6.2	0.9255
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10010686 [exp]	6.9	0.9187
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10035953 [exp]	7.0	0.9206
AT4G23490			Protein of unknown function (D...		Lus10028769 [exp]	7.5	0.9003
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10039091 [exp]	8.9	0.9145

Compare expression of checked genes

Lus10024898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.