Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54790 400 / 8e-129 ARM repeat superfamily protein (.1.2) AT2G23140 386 / 4e-122 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 328 / 2e-101 ARM repeat superfamily protein (.1) AT3G01400 257 / 1e-78 ARM repeat superfamily protein (.1) AT5G58680 238 / 1e-71 ARM repeat superfamily protein (.1) AT3G46510 245 / 7e-71 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT4G16490 235 / 4e-69 ARM repeat superfamily protein (.1) AT3G54850 235 / 2e-67 ATPUB14 plant U-box 14 (.1) AT1G71020 230 / 3e-67 ARM repeat superfamily protein (.1.2) AT1G23030 232 / 2e-66 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022919 [exp] 1382 / 0 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 371 / 1e-113 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 370 / 3e-113 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011516 [exp] 275 / 1e-81 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10007738 [exp] 263 / 5e-81 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10039047 [exp] 252 / 1e-75 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10016565 [exp] 253 / 1e-73 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 251 / 1e-72 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 234 / 4e-67 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225400 [exp] 910 / 0 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 492 / 2e-163 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.007G051000 [exp] 382 / 3e-120 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 381 / 4e-120 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G118800 [exp] 272 / 2e-84 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 261 / 2e-80 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 257 / 3e-75 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 253 / 6e-74 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G128600 [exp] 234 / 4e-67 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.010G113900 [exp] 233 / 7e-67 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10024899 pacid=23178838 polypeptide=Lus10024899 locus=Lus10024899.g ID=Lus10024899.BGIv1.0 annot-version=v1.0 ATGGACGGAACATCTATAAGCTGTCTTGTCAACAGCATTTCTCGATTCATTCTTCTCGTTTCATGCCATACAAGGATACATGCTACTATTCAAAAGGATT ATAGAAACATGGTCATGGTGCTAAAGTATTTGAAGCCAGTGCTCGACGATGTTGTCGACTACGAGTTAACGTCAGCAGAAATTCTATATCAAGAGTGCGA AGAGCTTGATGCAGCTGTTAATGAGGCCAGAGAATTTATCGAAACCTGGTCTCCCAAACTGAGCAAGATTCGCAGTGTTCAGAAGAGTGGAGCCCTGGTA ATGGAAATCCAACGATCCTCGCTGGAGATCTGCCATATATTATGTATGCTGTTACAATCTTCTCCAACTGATACCGATACAACTGGTATTCAGTTCTTAT ATGTGACTTTGGAACCCGGTGTGCAAACTAACTTTGAAGCACCGTCTCAGAATTGCATGCAGGAGCTTCAGAGTTTGAAGCAAGAATCACTTACACTGTA TATAGAAGACGCATTAACGAGTCCAAGAGATGATACTGGTCCTTGCAGTGATCATGTGATGAAAGTCATCGGCTCATTTAATTTGACATCGAACCGTGAT CTGCTGAAAGAAAGTGTGGCCGTGGAAAAGGAAAGGATGAATACCAATAACGAGAAAGGGAACATGGATAAGATAAACCAAGTTGTTGATCTCCTCTGTC ATATTCGTGCATGTCTGCTTAGAGTTGAGTGCTCCGAACCCAAGAGTGGTGTTCGAATCCCTCCGTACTTCCGCTGCCCCTTGTCTTTGGAGCTTATGTT GGACCCTGTCATTGTGGCTTCTGGTCAAACTTACGAGAGGTCTGCAATCCGGAAATGGCTAGATCATGGCTTGACTGTTTGCCCAAAGACCCGTCAAACA CTTTCTCATACAAATCTCATCCCCAATTACACTGTCAAAGCTATGATAGCAAATTGGTGTCAGGAGAATAACGTAAAGCTTTCTGGCTACTCTGAGCGTG CTAAACTTACACTTTCACCAGCATCAGATCCTCGTTTATCTCGCTCAGTCAGTGTGAGCTACTCTATAGACAGTAGTAGTAAGTCTTCTCCTAGATCATC CGTTGAAGTTCAAGAAGGATTTTTGAAGCATGAAGTTAATGAATCAAATGGACATAAAAGTGTGAAGAATGGAATTGCCAAATGCCCTTCTCTGGAACTT TCAGACCATATGATCAGCAGGAGTGCATCTGCTACAAGTGCTGTTTCCAGCTCCGAACAAGTGTCAAGAACATCTTCGAAGCATGAGAATGCAAGTGAAA TCTCGGGAGAGATCACGTCTAAAGCTCCTGCTGCTCCTAATAAGGAATCCATGAAGCAATCTCTAGGTCCTGAAAGAAAACCAGACATTCCAAGCAATGG AAACTTCCGCAACAGAGTGCATTCTTTACCGCCTGATGCTTCGTATGATGATTTAACTACGGCTTCTCATATCGAGGACTTGGTTCAGGACTTACAATGT CAATCAGACGAACTACAGACTACAGCTGCTGCCGAGTTGCGTTTCCTCACGAAACACAACACAGAGAATCGTGTAATAGTGGCGGAATCTGGTGCTATCG CGCCATTGCTAACCCTTCTCTACACAGAAGCTAAGCTAACTCAGGAGCATGCTGTCACCGCTCTCCTGAATCTATCGATCCGTGAAGAGAACAAGAACAT GATAGCAGAAGCAGGAGCGATCAAGCCACTTATTCATGTCCTGAATTCAGGGAGCGACACAGCCAGAGAGAACTCCGCAGCGACTCTCTTTAGCCTGTCT GTCTTGGAAGAGTACAAGGCGAAAATAGGCCGGTCCGGTGCAGTTAAAGCATTGGTGAATCTTCTAAGTTCAGGAACTCTGAGAGGGAAAAAAGATGCTG CCACTGCATTGTTTAACCTCTCAATCTTCCATGAAAACAAAGCTCGCATCGTTCAGGCTGGAGCGGTGAAACATCTGGTGGAGTTGATGGAGTCTGCGAC CGGGATGGTTGATAAATCAGTGGCTCTTCTTGCCAACTTGTCGACGGTTGGGGAAGGACGTTTGGCGATTGCCAGGGCCGGAGGCATTCCTCTTCTTGTT GAGGTTGTTGAGTCGGGATCACAAAGGGGAAAGGAAAATGCTGCGTCGGTATTAGTCCAACTGTGCCTTAATAATCCAAAGTACTGTACCCTTGTTCTTC AAGAAGGAGCTGTCCCTCCCCTTGTTGCCCTGTCCCAATCTGGAACACCAAGAGCTAGAGAGAAGGCTCAGCTTCTCTTAGGCCACTTCAGAAATCAGAG AGAAGGAAATGCAGGGAAGGGGAAATCATGA
AA sequence Show only first row Show all	>Lus10024899 pacid=23178838 polypeptide=Lus10024899 locus=Lus10024899.g ID=Lus10024899.BGIv1.0 annot-version=v1.0 MDGTSISCLVNSISRFILLVSCHTRIHATIQKDYRNMVMVLKYLKPVLDDVVDYELTSAEILYQECEELDAAVNEAREFIETWSPKLSKIRSVQKSGALV MEIQRSSLEICHILCMLLQSSPTDTDTTGIQFLYVTLEPGVQTNFEAPSQNCMQELQSLKQESLTLYIEDALTSPRDDTGPCSDHVMKVIGSFNLTSNRD LLKESVAVEKERMNTNNEKGNMDKINQVVDLLCHIRACLLRVECSEPKSGVRIPPYFRCPLSLELMLDPVIVASGQTYERSAIRKWLDHGLTVCPKTRQT LSHTNLIPNYTVKAMIANWCQENNVKLSGYSERAKLTLSPASDPRLSRSVSVSYSIDSSSKSSPRSSVEVQEGFLKHEVNESNGHKSVKNGIAKCPSLEL SDHMISRSASATSAVSSSEQVSRTSSKHENASEISGEITSKAPAAPNKESMKQSLGPERKPDIPSNGNFRNRVHSLPPDASYDDLTTASHIEDLVQDLQC QSDELQTTAAAELRFLTKHNTENRVIVAESGAIAPLLTLLYTEAKLTQEHAVTALLNLSIREENKNMIAEAGAIKPLIHVLNSGSDTARENSAATLFSLS VLEEYKAKIGRSGAVKALVNLLSSGTLRGKKDAATALFNLSIFHENKARIVQAGAVKHLVELMESATGMVDKSVALLANLSTVGEGRLAIARAGGIPLLV EVVESGSQRGKENAASVLVQLCLNNPKYCTLVLQEGAVPPLVALSQSGTPRAREKAQLLLGHFRNQREGNAGKGKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23140			RING/U-box superfamily protein...		Lus10024899 [exp]	0	1
AT2G23140			RING/U-box superfamily protein...		Lus10022919 [exp]	2.6	0.8648
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10014222 [exp]	3.0	0.8448
AT5G55470		ATNHX3	Na+/H+ \(sodium hydrogen\) exc...		Lus10014891 [exp]	4.5	0.8397
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10025272 [exp]	4.5	0.8628
AT5G35930			AMP-dependent synthetase and l...		Lus10020348 [exp]	7.0	0.8320
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10007951 [exp]	8.9	0.8052
AT4G39050			Kinesin motor family protein (...		Lus10017496 [exp]	12.3	0.8299
AT3G13000			Protein of unknown function, D...		Lus10034787 [exp]	13.4	0.8014
AT1G54385			ARM repeat superfamily protein...		Lus10002627 [exp]	14.1	0.8159
AT3G48210			unknown protein		Lus10018093 [exp]	15.0	0.8108

Compare expression of checked genes

Lus10024899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.