Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23160 242 / 8e-73 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) ATMG00810 169 / 1e-51 ATMG00810.1, ORF240B DNA/RNA polymerases superfamily protein (.1) ATMG00240 0 / 1 ATMG00240.1, ORF111A Gag-Pol-related retrotransposon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G138801 [exp] 72 / 7e-16 ATMG00810 58 / 2e-11 DNA/RNA polymerases superfamily protein (.1) Potri.018G017400 [exp] 62 / 1e-10 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1) Potri.001G191600 [exp] 55 / 2e-08 AT3G16370 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G441040 [exp] 52 / 2e-07 AT4G03230 322 / 1e-97 S-locus lectin protein kinase family protein (.1) Potri.006G163301 [exp] 46 / 1e-06 ATMG00810 60 / 4e-12 DNA/RNA polymerases superfamily protein (.1) Potri.014G113400 [exp] 49 / 2e-06 AT3G62150 382 / 4e-122 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024900 pacid=23178853 polypeptide=Lus10024900 locus=Lus10024900.g ID=Lus10024900.BGIv1.0 annot-version=v1.0 ATGGAAGTCGCTCGAAATACAACAGGGATACACCTTTGTCAACGTAAATACATCCTTGACTTACTCTCTGACACATGCTACACAAATTGCAAACCAGCCT CCACTCCAAGTGATCCTGGCATTAATCTCAGCTCAAAAGAAGGATCCCCCCTAGATTCCGACCAAATCACAGCATATCGATGCTTACTTGGCCGTCTTCA ATATCTATGCACAACCCGACCAGATATATGCCAAACGGTCAATCATCTTAGCCAATTCGTTTCAGCACCCACCACAGCTCACGAAAAAGCTACCCATCGC CTTCTTCGATATCTCAAAAACACCGCTGGCCATGGACTCCATTTTTCAAACAAATCATCGTTCAAAATTCACGCTTTCTCCGATTCAGATTGGGCTGGAT GCCCTGACTCTCGACGCTCAGTCACAGGTTTTTGCGTCTTCCTTGGAGACTCCCTCATATCTTGGAAATCGAAAAAGCAACCCACCGTTTCCAGATCATC CACAGAAGCTGAATATCGAGCACTTGCATCTACCGCAGCTGAACTCCAATGGCTCCATGGACTCATTTCCAACTTTCCCATCAATATACCCCATCCCTAC AAAATATATTGCGACAATCTATCCGCAGTTAAAATGACAGAAAACCCTATCCAACACGAAAGAACAAAACACATCGAGTTAGATTGCCACTTTATACGAG ACAAAGTTCTCACCGGATTTCTCAAAGTCCAACATATATCCACTCATAACCAACTCGCGGATCCTTTCACAAAATCTTTACCCGTTCACACTTTCCAAAA TCTCATTTCCAAACTAAACTTGGAATCTATCCATGCTTAG
AA sequence Show only first row Show all	>Lus10024900 pacid=23178853 polypeptide=Lus10024900 locus=Lus10024900.g ID=Lus10024900.BGIv1.0 annot-version=v1.0 MEVARNTTGIHLCQRKYILDLLSDTCYTNCKPASTPSDPGINLSSKEGSPLDSDQITAYRCLLGRLQYLCTTRPDICQTVNHLSQFVSAPTTAHEKATHR LLRYLKNTAGHGLHFSNKSSFKIHAFSDSDWAGCPDSRRSVTGFCVFLGDSLISWKSKKQPTVSRSSTEAEYRALASTAAELQWLHGLISNFPINIPHPY KIYCDNLSAVKMTENPIQHERTKHIELDCHFIRDKVLTGFLKVQHISTHNQLADPFTKSLPVHTFQNLISKLNLESIHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	0	1
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	1.7	0.9061
AT1G09920			TRAF-type zinc finger-related ...		Lus10042917 [exp]	2.0	0.8711
					Lus10040545 [exp]	2.4	0.8532
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10013551 [exp]	3.6	0.7912
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	3.9	0.8414
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	5.3	0.8521
					Lus10019815 [exp]	6.0	0.8385
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10003388 [exp]	6.3	0.8191
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	6.5	0.8321
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	6.7	0.8264

Compare expression of checked genes

Lus10024900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.