Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54690 177 / 3e-54 SETH3 Sugar isomerase (SIS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003549 [exp] 205 / 6e-65 AT3G54690 537 / 0.0 Sugar isomerase (SIS) family protein (.1) Lus10033902 [exp] 204 / 1e-64 AT3G54690 543 / 0.0 Sugar isomerase (SIS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225700 [exp] 189 / 9e-59 AT3G54690 539 / 0.0 Sugar isomerase (SIS) family protein (.1) Potri.002G037400 [exp] 188 / 2e-58 AT3G54690 514 / 0.0 Sugar isomerase (SIS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain CL0067 [flax] [poplar] SIS PF01380 [flax] [poplar] SIS SIS domain
Representative CDS sequence Show only first row Show all	>Lus10024902 pacid=23178894 polypeptide=Lus10024902 locus=Lus10024902.g ID=Lus10024902.BGIv1.0 annot-version=v1.0 ATGGGCTCTCTTCCGCCGTCCCTCGACGACCTCCCTTCTCTGCCGCCCTCCGATCCCAAACACAACCAGATCGAAGAATCCACCCTTCTGAAGCTCTTCA AATCCCAACAGAGACACCTCAACTACTTCTTCCGCCACCTGGACCTCACCCAGGCGCTCACCTTTACCCACACCCTCCTCAACTCCCCCGGGACCATCTT CTTCACCGGTGTCGGGAAGTCCGGCTTCGTCGCAAACAAGATCTCCCAAACGCTAATCTCCCTCGGCATCCGCCCGTCATTCCTTAACCCCTTCGACGCC CTCCACGGCGACATCGGCACTCTTTCTTCCCTCGACATCCTCGTCCTCTTTAGCAAGTCCGGCAACACCGAGGAGCTCCTCCGCCTTGTTCCCTGTGCTA GGGATGTGAAGGATGTAATGAAGAAGCAAAACGAGCTACCGGTTTGCAGGGAGGGAGATTTGATAATGGATCAGCTGGTTGAGCTGACAAGCAAAGGATG TGGTTGCCTTCTAGTCATACACCCGGATCAGCATCGCCTTATCGGGACATTCACAGATGGCGATCTCCGGCGAACTCTCAAGGCTAGCGGGGAAGGAATA TTCAAGCTTACAGTTGGAGAAATGTGTAACCGGAGGCCGAGAACTATAGGTCCGGACGCAATGGCAGTGGAAGCAATGAAGAAGATGGAATCGCCCTCCA CGGACTAG
AA sequence Show only first row Show all	>Lus10024902 pacid=23178894 polypeptide=Lus10024902 locus=Lus10024902.g ID=Lus10024902.BGIv1.0 annot-version=v1.0 MGSLPPSLDDLPSLPPSDPKHNQIEESTLLKLFKSQQRHLNYFFRHLDLTQALTFTHTLLNSPGTIFFTGVGKSGFVANKISQTLISLGIRPSFLNPFDA LHGDIGTLSSLDILVLFSKSGNTEELLRLVPCARDVKDVMKKQNELPVCREGDLIMDQLVELTSKGCGCLLVIHPDQHRLIGTFTDGDLRRTLKASGEGI FKLTVGEMCNRRPRTIGPDAMAVEAMKKMESPSTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10024902 [exp]	0	1
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10011348 [exp]	2.2	0.6716
AT1G78880			Ubiquitin-specific protease fa...		Lus10030215 [exp]	2.4	0.7131
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	6.9	0.7068
					Lus10038468 [exp]	7.2	0.6851
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Lus10021755 [exp]	7.5	0.6637
					Lus10038470 [exp]	15.5	0.6622
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	24.1	0.6889
AT3G52270			Transcription initiation facto...		Lus10040384 [exp]	32.9	0.6200
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10041840 [exp]	35.6	0.6640
AT1G17665			unknown protein		Lus10006153 [exp]	36.2	0.6297

Compare expression of checked genes

Lus10024902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.