Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 408 / 6e-140 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 393 / 6e-134 Eukaryotic aspartyl protease family protein (.1) AT2G35615 340 / 4e-113 Eukaryotic aspartyl protease family protein (.1) AT1G31450 321 / 1e-105 Eukaryotic aspartyl protease family protein (.1) AT2G28010 264 / 3e-84 Eukaryotic aspartyl protease family protein (.1) AT2G28030 254 / 2e-80 Eukaryotic aspartyl protease family protein (.1) AT2G28040 246 / 3e-77 Eukaryotic aspartyl protease family protein (.1) AT2G03200 220 / 2e-66 Eukaryotic aspartyl protease family protein (.1) AT2G28220 224 / 2e-65 Eukaryotic aspartyl protease family protein (.1) AT1G01300 189 / 2e-54 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024910 [exp] 793 / 0 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 765 / 0 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 586 / 0 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 585 / 0 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 582 / 0 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041150 [exp] 531 / 0 AT5G33340 399 / 2e-137 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 508 / 1e-178 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002611 [exp] 481 / 3e-168 AT5G33340 392 / 9e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 474 / 2e-165 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 447 / 3e-155 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 414 / 3e-142 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 333 / 2e-110 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 244 / 5e-76 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 238 / 2e-73 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 199 / 2e-58 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 190 / 6e-55 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 187 / 7e-54 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 184 / 3e-52 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 166 / 4e-45 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10024903 pacid=23178977 polypeptide=Lus10024903 locus=Lus10024903.g ID=Lus10024903.BGIv1.0 annot-version=v1.0 ATGGCCTCCAATGTCAAAGTCACCACAATTGTTCTCAAGCATTCACTACTAGCCACATTAGTCCTTTGTAATATGCTCACTTCCACATTTGTCGCAGCTC AGAGCGGAGGATTTAGTGTGGATTTGATCCACCGCGACTCCTCTGCAGGTTCTCCATTCTACAATGCAAAGGAAACCCCATCTCAACGTATTGAGAACGC TTTGAAGCGGTCCATTGCTCGAGGACGTCGCTTCAGCTATGTTCTACGTACTAATCATTCGTCAGGTTATGAGTCTATTATCTCACTTTCTGATCCCGAA GCAGGAATAACGGCCAACAATGGGGAGTATCTCATGAACATCTCCCTAGGCACGCCACCTTTCTCAATTGTTGCGATAGCTGATACTGGGAGCGACATTA TATGGACTCAGTGCAAGCCATGTACTGGTTGTTACAAGCAGGACGCTCCATTGTTTGATCCCAAATCATCTAGTACTTACAAAACTGTCTCGTGTTCGTC TGATGCTTGTAATTCGCTTCAGAGTGAAGGAAGCTACTGCTCATCAAACGGCAACATCTGCCAGTACCAGGTGAGCTACGGGGATCAATCCCACACGAAA GGAGATGTTGCAGCCGAAACGCTCACTCTAGGGTCCACCAGTGGTCGTTCGGTGGCGCTCCCTAAGACAGTGATTGGCTGCGGGCACGACAATGCCGGAA CATTTAGCCCGAAGGGGTCAGGAATTGTTGGTCTCGGAGGGGGTCCGGCTTCCCTTGTTACCCAACTCGGTTCCTCCATTGCCGGAAAATTCTCTTACTG CCTGGTTCCATACACAGCGGCTCAGCTGACCAGTACGATGCACTTTGGCAAAAATGCCATCGTTTCAGGAAACAATGTGGTTTCCACCCCACTGATCTCT AGTCCTTTGATGTCGACCTTTTACTTCCTTCAACTCCAAGCTGTTAGTGTCGGAAGCAAAAAAGTACCCTTCCAAGGATCCTCCATTGGAAGTTCAGGAA ACATCATAATCGATTCCGGGACCACGCTCACCCTCGTACCTACAGATTTCTTATCCCAGCTATCTGATGCCGTGGAGAGCCAAGTCACCGGTGGTACCAA GACCAGCGATCCACAAGGATTGTTGAGCCTATGCTACATGGTGAACTCGAACCTCAAAGTTCCTCCAATCACAGCGCATTTTCAGGGAGCTGATGTGGTG CTAACCTCGTACAATACTTTCATCGAAATGAGCGATTCAGTGACATGTTTCGCTTTCTACGCTAACGACGAGTTAAGCATCTATGGAAACATCGCACAAC AAAATTTCCTGATTGGCTACGACCTTCAAAAGCAGAGTTTGTCCTTCAAGCCAACAGATTGCACAAAAAACTGA
AA sequence Show only first row Show all	>Lus10024903 pacid=23178977 polypeptide=Lus10024903 locus=Lus10024903.g ID=Lus10024903.BGIv1.0 annot-version=v1.0 MASNVKVTTIVLKHSLLATLVLCNMLTSTFVAAQSGGFSVDLIHRDSSAGSPFYNAKETPSQRIENALKRSIARGRRFSYVLRTNHSSGYESIISLSDPE AGITANNGEYLMNISLGTPPFSIVAIADTGSDIIWTQCKPCTGCYKQDAPLFDPKSSSTYKTVSCSSDACNSLQSEGSYCSSNGNICQYQVSYGDQSHTK GDVAAETLTLGSTSGRSVALPKTVIGCGHDNAGTFSPKGSGIVGLGGGPASLVTQLGSSIAGKFSYCLVPYTAAQLTSTMHFGKNAIVSGNNVVSTPLIS SPLMSTFYFLQLQAVSVGSKKVPFQGSSIGSSGNIIIDSGTTLTLVPTDFLSQLSDAVESQVTGGTKTSDPQGLLSLCYMVNSNLKVPPITAHFQGADVV LTSYNTFIEMSDSVTCFAFYANDELSIYGNIAQQNFLIGYDLQKQSLSFKPTDCTKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024903 [exp]	0	1
					Lus10000529 [exp]	4.6	0.9876
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	6.5	0.9876
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041682 [exp]	6.9	0.8950
					Lus10021990 [exp]	7.3	0.8772
AT2G04865			Aminotransferase-like, plant m...		Lus10014633 [exp]	7.9	0.9876
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	9.2	0.9876
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10007595 [exp]	9.9	0.8264
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	10.2	0.9876
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10005468 [exp]	10.5	0.7508
					Lus10008001 [exp]	11.2	0.9876

Compare expression of checked genes

Lus10024903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.