Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57790 99 / 7e-22 F-box family protein (.1) AT3G18720 69 / 7e-12 F-box family protein (.1) AT4G00893 67 / 2e-11 unknown protein AT4G10660 59 / 5e-09 CDC68-related (.1) AT4G10695 51 / 1e-06 CDC68-related (.1) AT4G12370 47 / 2e-05 unknown protein AT4G12382 45 / 4e-05 F-box family protein (.1.2) AT3G56470 46 / 7e-05 F-box family protein (.1) AT4G22660 44 / 0.0003 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G49360 44 / 0.0007 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019204 [exp] 220 / 7e-65 AT1G57790 79 / 2e-16 F-box family protein (.1) Lus10013738 [exp] 219 / 4e-64 AT1G57790 73 / 3e-14 F-box family protein (.1) Lus10019040 [exp] 151 / 5e-42 ND / Lus10029943 [exp] 124 / 5e-29 AT1G57790 81 / 4e-16 F-box family protein (.1) Lus10004476 [exp] 123 / 5e-29 AT1G57790 92 / 4e-20 F-box family protein (.1) Lus10022706 [exp] 116 / 1e-27 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10019203 [exp] 111 / 1e-27 AT2G24250 48 / 2e-06 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) Lus10014208 [exp] 113 / 1e-26 AT1G57790 286 / 2e-94 F-box family protein (.1) Lus10013731 [exp] 93 / 2e-20 AT1G17860 172 / 5e-53 Kunitz family trypsin and protease inhibitor protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106800 [exp] 166 / 3e-44 AT1G57790 99 / 6e-23 F-box family protein (.1) Potri.016G079300 [exp] 85 / 3e-17 AT1G57790 313 / 5e-105 F-box family protein (.1) Potri.006G212600 [exp] 69 / 3e-12 AT1G57790 294 / 2e-97 F-box family protein (.1) Potri.009G078900 [exp] 61 / 1e-09 AT5G24040 52 / 1e-07 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) Potri.002G014500 [exp] 55 / 2e-07 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.012G106750 [exp] 51 / 2e-06 AT1G57790 57 / 7e-09 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10024904 pacid=23178924 polypeptide=Lus10024904 locus=Lus10024904.g ID=Lus10024904.BGIv1.0 annot-version=v1.0 ATGGACGTGAAGAACAAAAGGCAATGGGACGATCTTCCCGGGGAACTTTTGGAATCGATAGTGGGACGATTGTTCGGCAGCGATATTACGGCCTTTCTAG CCGTATGTACGTCTTGGAGATCCGCTACTACTTCTGGAATCAAGCAGATTGACAATGACGACGTGCCTGAGATCGTCAAGCATCCTTTCTTATTACGCTA CCGACAAGGATCCAATTTCAGTCCAACGATCAAATCTTCTTATTGTGAGCTTTACTCTCCTGCTTACAGTAACAAGTATTTGGTAGAGTCTTTTCACAAG CTTCTCGACGATTCCCAAATTCATTCTTCCAACTACGGCTGGCTACTTTTGTCTCGAGGAAAACACTTCTTTTTCCTAAATCCTTCGACGGCAAACATCA TCCACCTGCCTTCTGTCCCAAGTTATAACCTATTATCACCTAACCGTGAATTCTCTTACAACAGAATGGCGTTTTCGGCTCCACCTACATCCCTCGACTG TGTGGTTTTCGGTCTTTTAGACATGGCGGACACATCTGGAAGAATCTTTTCCAGTCTCCTTAAAAGGGGACACAGTTCATGGATACACTATGTCGGTGTA TGGCACAGTCTTGGTAACAAGACCAAGAGGGAATTCATCTCCAAACGCTTTGTTGGTGAGAGCTGTTCTGCCAAATTGAAAGGTAACCGTTGTCGACCTA CGTCAATTCTTTGTGAAGGGGAATTCAAATGGTGTTGTTCTAGTTCCCCAGTTTTCCATAACAGAGCATTTTATTGTTTGAGCAAATATGGAGTCTTGGG AGTATTCAAACTGGACACGGAGAAGAAGAACCAAAGGTGGAGATTGATCAACACAACAATGCACAAAGCATTTAGGGTCAATGTTTTTGACGAACCTTAT CTGATGGAGTCGTCTGAGGGAGAGCTAATTTCAGTTGTGGTTGGAGCAAGAGGGGAGTCCATTAGGGTTTTCAAGTTCGACGAGAGTATAAACATGTGGC AAAACGTCTCTTCTCTTCAAGATCAGGTGATTTTTTTAAGTCGCACCTCGTGCTTGATGATGCATTGTGATAATCTACCGGTTAAGGGATTACGAAATAC CATTCATTTCCCAAGGTTCCACGGAAACTACAATATCTTCTACTCGCTTACGACGACCAAGTTTCACACTTTTGACGGTGGATACACATCTCAAGACCTG TTGGGTACTCAACTTCTCTTGGATTGTGCATGGTTGGTGCCAGAGTTCTCCTTCTCTTCGGGCGATGAGCTAGATTGGTCATCATCCAACATTCATGAGT CAATGTTTGAAGGAAGGGATTCGCTTCATCCAAATTATTTCATTCGCAACCTAACCTTGCAACGAACTGGTTCTTCAAATCGCAACATCCTAAGTGGCGA AAACAAGAGTTGCAAGGTAATGGAACATGAAGCATCATCAGTTGGACAAGCATGGATTATGTTGCAAGATGATGGAGATGGAGGAAGTGAAGAAGTGTCA TGCACACTTATAGACGTATTCGGAGGAATCTCGTATCCAATGGATCATTTAGCAGCAAGATTAAGAGGATTGAAGATATATGCGAGTGGTTATGGTAAAC TATTGATGATGAATATTCCTGCCGGTGATTGCATATTACTGGATACATCATCTATGACCATTTGCCCGCTACCTATGCTGCAAGATTACAACGACAAGTA CAAGACTAGTCTACTTTATTTATCTCCTCAAGATTCCAGGCTTTTCGTGATGATTTTTGGTGTAGTTAACACTAGGGTGGATCAGCTGGTTGCGAATGGA AATGAAGGAGATCAGAATGTCGACGACAAAGAGGGGGAGGAGGATTCTACCCAAAAGAAAGAGGATGATGATGACTACGACGACGACGACAACAATGATG ATGATGATGCTCAAGACAATGGGGAAGGTGATGAAGAAGAGCAAGCTATGGTGGCCAGGGTTAATCAGAGATTGGAGGCGTTTGACAATTTCTTTCGGTC GTCAGCATATGTTTGTCAAGTTGGGGCCGATGAGTGGAGTACACTCTCGTTTCGGGGTATGAAGTACAAAAATGTTGTCTTGTACAACGATAAGATTTAT GCAATCCAGACTAGTGGAATGGAATTGCGCGCGTTGGTTGAAATTGTAATGCAGCCAACTTATGATTACGATGCAGTTGAAGTGATCAATCCTTATCTAT GGACACAGAGAGGAAGCTTGAAAAGTAAGGAATATTTGGTCGCGTCAGGTGGGGAGCTCTTGATTATTCAAGTAGTTGTGGACGGATATAAGAAGCACGG TATCAATGTGATCGTGAAGATAAAAGTTTTCAAGTGCGATGTGAAGAGAGAGAAACTTGAAGAGTTGGAAGATCTTGGCGATAGAGCCTTCTTTATCAGC AACGGTAAGCGTTGTTTCGGATATTGTGCCACCAAAATTGGAGTGAAGAAGAACAACATATACCTGACATATTCAGGGGACCGACATGTATATAGATATG ACTATGGAGATAATAGTGTTTCGTCGTGCTTTTATTGTCCTGAGATTGGAAGTGATATCAGTCTCGAGCTTTTGTGTTCGAGCCGTAGACTTTAA
AA sequence Show only first row Show all	>Lus10024904 pacid=23178924 polypeptide=Lus10024904 locus=Lus10024904.g ID=Lus10024904.BGIv1.0 annot-version=v1.0 MDVKNKRQWDDLPGELLESIVGRLFGSDITAFLAVCTSWRSATTSGIKQIDNDDVPEIVKHPFLLRYRQGSNFSPTIKSSYCELYSPAYSNKYLVESFHK LLDDSQIHSSNYGWLLLSRGKHFFFLNPSTANIIHLPSVPSYNLLSPNREFSYNRMAFSAPPTSLDCVVFGLLDMADTSGRIFSSLLKRGHSSWIHYVGV WHSLGNKTKREFISKRFVGESCSAKLKGNRCRPTSILCEGEFKWCCSSSPVFHNRAFYCLSKYGVLGVFKLDTEKKNQRWRLINTTMHKAFRVNVFDEPY LMESSEGELISVVVGARGESIRVFKFDESINMWQNVSSLQDQVIFLSRTSCLMMHCDNLPVKGLRNTIHFPRFHGNYNIFYSLTTTKFHTFDGGYTSQDL LGTQLLLDCAWLVPEFSFSSGDELDWSSSNIHESMFEGRDSLHPNYFIRNLTLQRTGSSNRNILSGENKSCKVMEHEASSVGQAWIMLQDDGDGGSEEVS CTLIDVFGGISYPMDHLAARLRGLKIYASGYGKLLMMNIPAGDCILLDTSSMTICPLPMLQDYNDKYKTSLLYLSPQDSRLFVMIFGVVNTRVDQLVANG NEGDQNVDDKEGEEDSTQKKEDDDDYDDDDNNDDDDAQDNGEGDEEEQAMVARVNQRLEAFDNFFRSSAYVCQVGADEWSTLSFRGMKYKNVVLYNDKIY AIQTSGMELRALVEIVMQPTYDYDAVEVINPYLWTQRGSLKSKEYLVASGGELLIIQVVVDGYKKHGINVIVKIKVFKCDVKREKLEELEDLGDRAFFIS NGKRCFGYCATKIGVKKNNIYLTYSGDRHVYRYDYGDNSVSSCFYCPEIGSDISLELLCSSRRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57790			F-box family protein (.1)		Lus10024904 [exp]	0	1
AT4G34770			SAUR-like auxin-responsive pro...		Lus10016917 [exp]	10.8	0.8941
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10029893 [exp]	11.3	0.9214
AT5G27780			SAUR-like auxin-responsive pro...		Lus10023969 [exp]	14.7	0.8954
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10017469 [exp]	22.8	0.9093
AT1G29430			SAUR-like auxin-responsive pro...		Lus10025115 [exp]	23.6	0.9041
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10042160 [exp]	28.5	0.8479
AT2G41640			Glycosyltransferase family 61 ...		Lus10018048 [exp]	29.5	0.8397
AT2G46710			Rho GTPase activating protein ...		Lus10030213 [exp]	29.7	0.8360
AT2G20760			Clathrin light chain protein (...		Lus10018582 [exp]	32.1	0.9013
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024627 [exp]	37.3	0.9001

Compare expression of checked genes

Lus10024904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.