Plant FIBer expression Database

Lus10024906 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24900 119 / 6e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022913
[exp]
258 / 2e-85 AT4G24900 331 / 4e-110 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G098000
[exp]
110 / 1e-28 AT4G24900 318 / 4e-105 unknown protein
Potri.015G096700
[exp]
87 / 3e-20 AT4G24900 111 / 2e-27 unknown protein
PFAM info
Representative CDS sequence
>Lus10024906 pacid=23178998 polypeptide=Lus10024906 locus=Lus10024906.g ID=Lus10024906.BGIv1.0 annot-version=v1.0
ATGAAGACATATTGTAAGGGTCAAAATAGAAGCATTTGGCCAAATGAAGAAGTAGAAACTGCTGAAATAGATGTCTTTTGTCGAGTTGTATGTGATGCTA
ACAGCTCTCTGCCTGGAAACTCAATTGATCTAACAGGTTGGCAAAATAGCTACTACCATTATACCCCCCACAACGGCACAAACAATCCTGGAAACGGAGG
GGTTCGTCAAGGTAAACACATTGCCAAAGGAGAGAGTCGCTCTCAGGGTGTGGCTAGTATAGATCAAGTATCTATCACAACTCCTGAACTGGCTGGAGGA
AATGTGCACACAGGAGCACATCCTCCATGGTTGGAGGTGTCAGAAGGAAACGGTATAGGCACGACCTCAGTAGCTCCGTCTAGTAAGAAAAAGAAATCTA
GGTTGAATCCAAAAAGAGTGGGTGCTGAATGGGCAGAAAAGAGAAAGCTTGTACTTGAAATGGAGAAGAGAGGAGACATCGTCAAAAGCGAGTGTTCTAC
TAACTGGTTGCCCAACTTCGGTAGAGTTTGGGAGTCTGGTAGCCGGAAAGAATCTCGTAGAGAATTTGAAAACTAA
AA sequence
>Lus10024906 pacid=23178998 polypeptide=Lus10024906 locus=Lus10024906.g ID=Lus10024906.BGIv1.0 annot-version=v1.0
MKTYCKGQNRSIWPNEEVETAEIDVFCRVVCDANSSLPGNSIDLTGWQNSYYHYTPHNGTNNPGNGGVRQGKHIAKGESRSQGVASIDQVSITTPELAGG
NVHTGAHPPWLEVSEGNGIGTTSVAPSSKKKKSRLNPKRVGAEWAEKRKLVLEMEKRGDIVKSECSTNWLPNFGRVWESGSRKESRREFEN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G24900 unknown protein Lus10024906
[exp]
0 1
Lus10002271
[exp]
4.7 0.6863
Lus10021617
[exp]
5.3 0.6297
AT5G15110 Pectate lyase family protein (... Lus10013267
[exp]
7.0 0.6385
AT5G60770 ATNRT2.4 ARABIDOPSIS THALIANA NITRATE T... Lus10016119
[exp]
7.0 0.7053
AT5G44450 methyltransferases (.1) Lus10042846
[exp]
14.1 0.6197
AT5G08640 ATFLS1, FLS flavonol synthase 1 (.1.2) Lus10023601
[exp]
16.9 0.6821
Lus10005955
[exp]
21.9 0.6732
AT2G44060 Late embryogenesis abundant pr... Lus10019367
[exp]
24.6 0.6371
AT3G02125 unknown protein Lus10013196
[exp]
26.6 0.6698
AT3G24850 B3 Domain of unknown function (DU... Lus10038802
[exp]
36.9 0.6207

Lus10024906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.