Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62380 43 / 4e-05 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT3G17730 42 / 6e-05 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G04070 42 / 0.0001 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G12260 41 / 0.0001 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT1G62700 41 / 0.0002 NAC ANAC026, VND5 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) AT1G65910 41 / 0.0002 NAC ANAC028 NAC domain containing protein 28 (.1) AT1G61110 40 / 0.0003 NAC ANAC025 NAC domain containing protein 25 (.1) AT3G49530 40 / 0.0004 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT4G36160 39 / 0.0009 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022914 [exp] 235 / 3e-80 AT1G61110 54 / 7e-09 NAC domain containing protein 25 (.1) Lus10009924 [exp] 59 / 3e-11 AT3G04070 62 / 1e-11 NAC domain containing protein 47 (.1.2) Lus10036959 [exp] 58 / 1e-10 AT3G04070 82 / 8e-19 NAC domain containing protein 47 (.1.2) Lus10037106 [exp] 53 / 5e-09 AT3G04070 78 / 3e-17 NAC domain containing protein 47 (.1.2) Lus10031721 [exp] 48 / 9e-07 AT1G12260 353 / 4e-121 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10031142 [exp] 47 / 1e-06 AT1G12260 351 / 4e-120 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10036955 [exp] 44 / 1e-05 AT3G15510 52 / 2e-08 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10007410 [exp] 43 / 5e-05 AT3G15510 241 / 1e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10017915 [exp] 42 / 8e-05 AT1G71930 314 / 4e-107 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G027900 [exp] 55 / 3e-09 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.002G181800 [exp] 48 / 6e-07 AT4G01550 138 / 1e-35 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2) Potri.015G002900 [exp] 46 / 3e-06 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.003G113000 [exp] 46 / 3e-06 AT1G12260 439 / 3e-154 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.001G120000 [exp] 45 / 1e-05 AT1G12260 455 / 1e-160 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.017G139500 [exp] 44 / 2e-05 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.019G063000 [exp] 43 / 3e-05 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.012G126500 [exp] 43 / 3e-05 AT1G12260 348 / 3e-118 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.006G028700 [exp] 43 / 3e-05 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G129400 [exp] 42 / 6e-05 AT1G61110 247 / 3e-80 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10024907 pacid=23178831 polypeptide=Lus10024907 locus=Lus10024907.g ID=Lus10024907.BGIv1.0 annot-version=v1.0 ATGAGGATTCCCGGAGCTCCGGTGGGTTACAGATTTCGCCCGTCCTGCGAACAAGTCATTGAGTACCTCCTCAATAAGGTCAAGGGCAATACTTTGCCCA GTGTGATCTTCGATCGTGATCTTTATGGAGAGGACGAAGTCTGGAAGAGTCTCTTCAGCGAGACGAACGCTTCCGAGCTTTACTTCTGCACCAAATTGCT GAAGAAGAAGAAGAAAGACGGCAAAAGAGTTGTGAGAAAGGTGGGAACGAATGGCACGTGGCGGTCCAACAGGGATGAACAGGTTTTCAGCCAAGGCGTT CACATCGGTTCGAAGAGGTGTTTCTCGTACCAGGAGAAAGAGAAATCAGCTGTCGGCGGATTAGGGTTTGTGATGGACGAGTATCGCCTCGACGGAGTCC TTGGCGGGCATCCAGAGGCCTCTGAGGTCGTGATTTGCTGCGTAAGGAAGAAGTTGGACAAGAAGATGGGGAAATCGAATCGATATCGATTGTGA
AA sequence Show only first row Show all	>Lus10024907 pacid=23178831 polypeptide=Lus10024907 locus=Lus10024907.g ID=Lus10024907.BGIv1.0 annot-version=v1.0 MRIPGAPVGYRFRPSCEQVIEYLLNKVKGNTLPSVIFDRDLYGEDEVWKSLFSETNASELYFCTKLLKKKKKDGKRVVRKVGTNGTWRSNRDEQVFSQGV HIGSKRCFSYQEKEKSAVGGLGFVMDEYRLDGVLGGHPEASEVVICCVRKKLDKKMGKSNRYRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Lus10024907 [exp]	0	1
					Lus10014200 [exp]	3.6	0.7894
					Lus10002152 [exp]	6.9	0.7133
					Lus10010117 [exp]	8.5	0.7133
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	9.8	0.7133
					Lus10005187 [exp]	11.0	0.7133
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	12.0	0.7133
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	13.0	0.7133
					Lus10039750 [exp]	13.9	0.7121
					Lus10012774 [exp]	15.5	0.6793
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	15.6	0.6813

Compare expression of checked genes

Lus10024907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.