Plant FIBer expression Database

Lus10024909 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20495 177 / 2e-55 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022916
[exp]
216 / 1e-70 AT2G20495 282 / 2e-95 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G225900
[exp]
222 / 7e-73 AT2G20495 362 / 7e-127 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10494 Stk19 Serine-threonine protein kinase 19
Representative CDS sequence
>Lus10024909 pacid=23178911 polypeptide=Lus10024909 locus=Lus10024909.g ID=Lus10024909.BGIv1.0 annot-version=v1.0
ATGGAGAACGACTCAGAGTCGCCCAGACGCAGAAAGCGCCGGCGTCAAGAAGCGAATGAAGAAAAAGAAGAAGAGAAGACTGATACTGAGACTGATACTC
TTATGGAAGAAACGAGGAGAGGTGATGCTGAAGTTTTTGAGTGGTTTAGAAAACATGTTATTGATTGCAAGTCGGAACCTAGTATTGGCCATCAAGAGCT
TGTGAATGCTCTGAATATCCTTAAACTAGTGTTGATCATTTCTAACTATGTGATTGTGAGGTTATTGAATTGCATGACCAAGGTCTTCACTGTTCTGATC
CTTTCCATGCAGCGGTCACTCCTGTCTAATGGTGGAAAGGTCAAGGATGCACATATTTCACTTCTAATCAATGCTGGTCTTCTAAGTCGTCAGCTAATTG
ATCCAAACATGTATTGGTTCACGATTCCAAATATTGGTTCAATACTAAAGGGCATTTCTCAGGGAAGGAAGGAGCTGCTATCTCTTCTAAACCGACGGAG
ATACAAGGAAATGATGTTAGCCCTCTTGGAGAAGAAGCATCTTCGAATGTCTCCACTCGATATTAGATTTCACCTGCGAGACCTGATTGGCTCAGGTCAC
CTCAAGACTGTTAGCACGCCAAGTGGCTTGGTAGTGCAGGTTTCGAAAGCTTAA
AA sequence
>Lus10024909 pacid=23178911 polypeptide=Lus10024909 locus=Lus10024909.g ID=Lus10024909.BGIv1.0 annot-version=v1.0
MENDSESPRRRKRRRQEANEEKEEEKTDTETDTLMEETRRGDAEVFEWFRKHVIDCKSEPSIGHQELVNALNILKLVLIISNYVIVRLLNCMTKVFTVLI
LSMQRSLLSNGGKVKDAHISLLINAGLLSRQLIDPNMYWFTIPNIGSILKGISQGRKELLSLLNRRRYKEMMLALLEKKHLRMSPLDIRFHLRDLIGSGH
LKTVSTPSGLVVQVSKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G20495 unknown protein Lus10024909
[exp]
0 1
AT5G27230 Frigida-like protein (.1) Lus10006522
[exp]
2.6 0.8587
AT1G78760 F-box/RNI-like superfamily pro... Lus10024701
[exp]
6.0 0.8264
AT4G25440 C3HZnF ZFWD1 zinc finger WD40 repeat protei... Lus10000559
[exp]
12.3 0.8272
AT3G58130 N-acetylglucosaminylphosphatid... Lus10034805
[exp]
13.4 0.8012
AT2G17280 Phosphoglycerate mutase family... Lus10001381
[exp]
14.9 0.7942
AT1G05020 ENTH/ANTH/VHS superfamily prot... Lus10029998
[exp]
16.4 0.7849
AT1G14830 DRP1C, ADL5, AD... DYNAMIN RELATED PROTEIN 1C, AR... Lus10043352
[exp]
19.3 0.8157
AT1G26660 Prefoldin chaperone subunit fa... Lus10026631
[exp]
19.9 0.7944
AT3G29760 Haloacid dehalogenase-like hyd... Lus10027135
[exp]
23.9 0.8123
AT4G33030 SQD1 sulfoquinovosyldiacylglycerol ... Lus10032973
[exp]
25.7 0.7937

Lus10024909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.