Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 436 / 8e-151 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 427 / 2e-147 Eukaryotic aspartyl protease family protein (.1) AT2G35615 362 / 1e-121 Eukaryotic aspartyl protease family protein (.1) AT1G31450 346 / 2e-115 Eukaryotic aspartyl protease family protein (.1) AT2G28010 272 / 2e-87 Eukaryotic aspartyl protease family protein (.1) AT2G28030 262 / 2e-83 Eukaryotic aspartyl protease family protein (.1) AT2G28040 257 / 1e-81 Eukaryotic aspartyl protease family protein (.1) AT2G03200 238 / 2e-73 Eukaryotic aspartyl protease family protein (.1) AT2G28220 232 / 2e-68 Eukaryotic aspartyl protease family protein (.1) AT1G01300 206 / 4e-61 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024903 [exp] 820 / 0 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 756 / 0 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 602 / 0 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 601 / 0 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 598 / 0 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041150 [exp] 545 / 0 AT5G33340 399 / 2e-137 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 533 / 0 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002611 [exp] 506 / 6e-178 AT5G33340 392 / 9e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002612 [exp] 499 / 3e-175 AT5G33340 393 / 5e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 470 / 3e-164 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 437 / 2e-151 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 349 / 9e-117 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 240 / 2e-74 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 238 / 1e-73 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 212 / 3e-63 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 201 / 8e-59 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 194 / 2e-56 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 193 / 7e-56 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G000600 [exp] 176 / 6e-50 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10024910 pacid=23178957 polypeptide=Lus10024910 locus=Lus10024910.g ID=Lus10024910.BGIv1.0 annot-version=v1.0 ATGGCCTCCAATGCCAAAGTCACCACATTGGCTCTCAAGCATTCACTACTAGCCACGTTAGTCCTTTGCAATATGCTCACTTCCACATTCGTCACAGCTC AGGGCGGAGGGTTTAGTGTGGATTTGATCCACCGCGACTCCTCAGGTTCGCCATTCTATGATGCAAAGGAGACCCCATCTCAACGTATTGAGAACGCTCT AAAGCGGTCCATTGCACGAGGTCGTCGTTTCAGTTATGTCCTACATACTAATCATTCGGCTGGTCATAAGTCTATCTCACCTTCTGATCCCGAAGCAGGA ATGACAGCCAACAATGGGGAGTACCTCATGAATATCTCCCTAGGCACGCCGCCTTTCTCAATTGTGGCGATAGCTGATACTGGGAGCGATATTATATGGA CTCAGTGCAAGCCATGTGCCGGCTGTTACAAGCAGGACGCTCCGTTGTTTGATCCCAAATCATCTAGTACTTACAAAACTGTGTCGTGCGCTTCCGATGC TTGTAATTCGCTTCAAAGTGAAGGGAGCTACTGCTCGTCAAACGGTGATGTCTGCCAATACCAGGTCAGCTACGGGGACCAATCCCACACGAAAGGAGAT GTTGCAGCCGAAACGCTCACTCTGGGGTCGACAAATGGTCGCCCAGTTGCTCTCCCTAAGACAGTTATTGGTTGCGGGCACGACAATGCCGGAACATTTA GCCCAACAGGGTCAGGCATCGTTGGTCTTGGAGGGGGTCCGGCTTCACTCGTTACCCAACTTGGTTCCTCCATTGCCGGAAAATTCTCTTACTGCCTGGT TCCATACACCGCGGCTAAGCTGACCAGTACAATGCACTTTGGCAAAAATGCTATCGTTTCAGGAAACAATGTGGTGTCCACGCCACTCATCTCTAGTCCT TTGATGTCCACCTTTTACTTCCTTCAACTCCAAGCTATTAGCGTCGGAAGCAAAAAAATACCCTTCCAAGGATCCTCCATTGGAAGTTCAGGAAACATCA TAATCGATTCCGGGACCACGCTCACCCTCGTACCTACAGATTTCTTATCCCAACTCTCTGATGCTGTGGAAAGCCAAGTCACCGGCAGTACCAAGACCAG CGATCCACAAGGATTGTTGAGCCTATGCTACATGGTAAACTCGAACTTCAAAGTTCCTCCGATCACAGCGCATTTTCAAGGAGCTGACGTGGTGCTAACC TCATACAATACTTTCATTGAAATGAGCGATACTGTAACGTGTTTCGCTTTCTATGCTAATGACGAGTTAAGCATCTACGGGAACATCGCGCAGCAGAACT TTCTAATTGGCTACGACCTTCAGAAGCAGAGTTTGTCCTTCAAGCCAACAGATTGCACAAAGAACTGA
AA sequence Show only first row Show all	>Lus10024910 pacid=23178957 polypeptide=Lus10024910 locus=Lus10024910.g ID=Lus10024910.BGIv1.0 annot-version=v1.0 MASNAKVTTLALKHSLLATLVLCNMLTSTFVTAQGGGFSVDLIHRDSSGSPFYDAKETPSQRIENALKRSIARGRRFSYVLHTNHSAGHKSISPSDPEAG MTANNGEYLMNISLGTPPFSIVAIADTGSDIIWTQCKPCAGCYKQDAPLFDPKSSSTYKTVSCASDACNSLQSEGSYCSSNGDVCQYQVSYGDQSHTKGD VAAETLTLGSTNGRPVALPKTVIGCGHDNAGTFSPTGSGIVGLGGGPASLVTQLGSSIAGKFSYCLVPYTAAKLTSTMHFGKNAIVSGNNVVSTPLISSP LMSTFYFLQLQAISVGSKKIPFQGSSIGSSGNIIIDSGTTLTLVPTDFLSQLSDAVESQVTGSTKTSDPQGLLSLCYMVNSNFKVPPITAHFQGADVVLT SYNTFIEMSDTVTCFAFYANDELSIYGNIAQQNFLIGYDLQKQSLSFKPTDCTKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024910 [exp]	0	1
AT5G55690	MADS		MADS-box transcription factor ...		Lus10014095 [exp]	1.0	0.9374
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10036610 [exp]	4.0	0.9250
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10043310 [exp]	4.9	0.9357
AT2G04865			Aminotransferase-like, plant m...		Lus10003728 [exp]	5.1	0.9175
AT3G05950			RmlC-like cupins superfamily p...		Lus10015128 [exp]	6.3	0.9128
AT1G67623			F-box family protein (.1)		Lus10006434 [exp]	11.6	0.9357
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10026957 [exp]	12.4	0.8007
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10029280 [exp]	13.0	0.9275
					Lus10034718 [exp]	14.2	0.8805
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	15.7	0.9326

Compare expression of checked genes

Lus10024910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.