Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21150 362 / 1e-119 HAP6 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022911 [exp] 554 / 0 AT4G21150 868 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Lus10003546 [exp] 364 / 2e-122 AT4G21150 454 / 6e-154 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036600 [exp] 401 / 2e-134 AT4G21150 806 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Potri.005G226100 [exp] 398 / 3e-133 AT4G21150 743 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05817 [flax] [poplar] Ribophorin_II Oligosaccharyltransferase subunit Ribophorin II
Representative CDS sequence Show only first row Show all	>Lus10024911 pacid=23178885 polypeptide=Lus10024911 locus=Lus10024911.g ID=Lus10024911.BGIv1.0 annot-version=v1.0 ATGTCATGGGGCTTTCTTAGATTAAAATGCCCAATTATATCTGACAATGATGCAAATAGGTATTCTTTGCTTTCTTCTAAATTTTGCGATGCTGAAGTTG TTGCCTATGTTGACAGGGTCTCTGTCCCCTTAATCCTATCACTTCCAGCCACAGTCATTTCATTGACCAAAGAAGACACACTCAAGGTCAAAGTCAATAC TGTACTTGGCTCAGATGCTCCTCCTCTAACGGTGAAGCTGGTACGAGCTTCCAGTGCTGGTGCAAAGGGTACTTCTGCTATTGAAAGTCAGGAACTCAAT TTTGATGCTGAGAACAAAGCGTATGTCTTGGACATTTTGAGAAAGGGTATTGATGTTGGCAAGTACATCTTTGTTTTCGAGGTTGTGTTTCATGACCCTG AGCATAAGAATGTTTACACTGCTGGAAGTAAAACTGAGGTTCCGGTCTTTGTTACTGGAGTTGTTAAAGTTGGCAATGCGGAGATTGCAGTCCTTGATAG TGATCTCGGGAGCATTGAAACTCAGAAGAAACTGGATTTTACTGGGAAGAATTCTGTATCACTGTCAGCAAATCATCTCCAGAAGCTGAAACTAAAATTT CAATTGACCACTCCTCTTGGCCATCCTTTCAAGCCACATCAGGCAATTCTCAAGCTAACTCATGAGAGCAAGGTGGAGCATGTCTTTGTGGTTGGGAACA CCGGAAAGCAATTCGAGATCGTTCTGGATTTCCTCTCACTCCTGGACAAATTTTACTACCTATCTGATAAATATGAAGTTCAGCTCACTGTTGGAGATGC TGTCATGGAGGAATCCTTCAAAGTAATTGCCCATCTTGACCTCGATCTACCAGAAGCACCTGAGAAGGCACCCCGCCCCCCTGCTCAGCTTGCTGATCCA TACTCAAGATACGGGCCAAAAGCTGAGATATCCCATATATTCAGAACTCCAGAGAAGCTTCCTCCCAAAGAGCTTCTACGACTGGGAGTAAACCTGAAGA ATTTCCCTTCTTCGGCCAAACCCGCCACATTTGCTGCTCTTTTCCACACGGGAATTGGAGCTGTTCTTTTGCTGTATGTGTTCTTCTGGTTGAAGTTGGA TCTGTTCACGACGCTGAAAGTACTGGGGATCATGGGAGTGTTCCTGCTGTTCGTCGGACACAGCACCCTTTCCCACCTAGCATCGACATCGTCGAAGTTG AAATCTGCTTGA
AA sequence Show only first row Show all	>Lus10024911 pacid=23178885 polypeptide=Lus10024911 locus=Lus10024911.g ID=Lus10024911.BGIv1.0 annot-version=v1.0 MSWGFLRLKCPIISDNDANRYSLLSSKFCDAEVVAYVDRVSVPLILSLPATVISLTKEDTLKVKVNTVLGSDAPPLTVKLVRASSAGAKGTSAIESQELN FDAENKAYVLDILRKGIDVGKYIFVFEVVFHDPEHKNVYTAGSKTEVPVFVTGVVKVGNAEIAVLDSDLGSIETQKKLDFTGKNSVSLSANHLQKLKLKF QLTTPLGHPFKPHQAILKLTHESKVEHVFVVGNTGKQFEIVLDFLSLLDKFYYLSDKYEVQLTVGDAVMEESFKVIAHLDLDLPEAPEKAPRPPAQLADP YSRYGPKAEISHIFRTPEKLPPKELLRLGVNLKNFPSSAKPATFAALFHTGIGAVLLLYVFFWLKLDLFTTLKVLGIMGVFLLFVGHSTLSHLASTSSKL KSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024911 [exp]	0	1
AT5G60760			P-loop containing nucleoside t...		Lus10021447 [exp]	1.4	0.9082
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	2.4	0.9004
AT5G64970			Mitochondrial substrate carrie...		Lus10026043 [exp]	3.7	0.8932
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10015176 [exp]	4.2	0.9056
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	4.2	0.8939
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002569 [exp]	5.5	0.8995
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	6.3	0.8997
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10014085 [exp]	7.1	0.8558
AT1G64650			Major facilitator superfamily ...		Lus10017322 [exp]	7.7	0.8811
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	8.8	0.8751

Compare expression of checked genes

Lus10024911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.