Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03905 402 / 5e-142 ABCI19 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G44110 390 / 2e-137 ABCI21, ATPOP1, ATNAP2, POP1 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATP-binding cassette A21, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G02270 265 / 1e-87 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) AT3G28860 43 / 0.0002 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G25960 42 / 0.0005 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 42 / 0.0005 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022909 [exp] 521 / 0 AT1G03905 436 / 1e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023792 [exp] 266 / 7e-88 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10010838 [exp] 268 / 1e-87 AT5G02270 514 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10003971 [exp] 266 / 2e-83 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10030674 [exp] 47 / 2e-05 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10006804 [exp] 44 / 0.0002 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10005798 [exp] 43 / 0.0002 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10027567 [exp] 43 / 0.0003 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10005249 [exp] 43 / 0.0003 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036300 [exp] 424 / 2e-150 AT1G03905 441 / 2e-157 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G226600 [exp] 420 / 4e-149 AT1G03905 435 / 3e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G086000 [exp] 270 / 1e-89 AT5G02270 511 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.003G155800 [exp] 261 / 4e-86 AT5G02270 503 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.017G081100 [exp] 44 / 0.0001 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.003G094400 [exp] 44 / 0.0001 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139600 [exp] 44 / 0.0002 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139700 [exp] 42 / 0.0004 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10024914 pacid=23178898 polypeptide=Lus10024914 locus=Lus10024914.g ID=Lus10024914.BGIv1.0 annot-version=v1.0 ATGGCGGAAAGTGCAGCTTCGGTGACTACACCGGCGGGCGGAGGAGGAGGAGACGGAGTCGGGAATGGCAGTATCAGCGTTTCGGCGATGCAGTTCTCGT ACGACGGAAAACAGGCGCCTCTATTCTTCGACTTCAATCTCGACATTGCTCCTGGATCTCGTTGCTTGCTCACCGGCGCCAATGGATCAGGGAAGTCGAC TTTACTGCGGATTGTGGCGGGGAAGCACATGGTAGGAGGGAAAGACGTCGTGAGAGTACTGAATAGCTCGGCTTTCCATGATACTCAGCTCGTTTGTAGT GGCGACTTGGCCTATTTGGGAGGTTCGTGGAGTAAAACCGTGGGATCGGCGGGAGAGATTCCGCTGCAGGGAGATTTCTCTGCTGAACATATGATATTTG GAGTTGAGGGAGTTGATCCAGCTAGAAGAGAGCAGCTAATTGAGCTACTTGATATCGATCTTCGATGGCGTATGCATAAGGTTTCTGATGGACAGCGACG CCGTGTTCAAATCTGTATGGGTCTTCTTTATCCATATAAGGTACTGTTATTGGATGAGGTGACAGTTGATTTGGACGTGGTTGCTAGGATGGACTTGCTC GAGTTCTTCAGGGAAGAAACTGAGCAGAGGGGAGCGACATTAATCTATGCAACTCACATTTTCGACGGGCTAGAGGAATGGGCAACCCACCTTGCCTACA TTCAAGAAGGTGAACTTAACAGGTACTCGAAGCTATCCGAGCTGAACGAGTTGAAAACCTCCGTAAACCTGCTCACTGTCGTCGAGAACTGGCTACGTGC CGAAACCAAGCAGGAGAAGAAAAAGAAGAAGGAACCCATCAAAGCCCCTCCAGCCCAAAGCCAGAAGCCCACCTCCGCTTCTCCGTTCATGTCATCCAGT AGACACATGGCCTATTACCGTTGA
AA sequence Show only first row Show all	>Lus10024914 pacid=23178898 polypeptide=Lus10024914 locus=Lus10024914.g ID=Lus10024914.BGIv1.0 annot-version=v1.0 MAESAASVTTPAGGGGGDGVGNGSISVSAMQFSYDGKQAPLFFDFNLDIAPGSRCLLTGANGSGKSTLLRIVAGKHMVGGKDVVRVLNSSAFHDTQLVCS GDLAYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGVDPARREQLIELLDIDLRWRMHKVSDGQRRRVQICMGLLYPYKVLLLDEVTVDLDVVARMDLL EFFREETEQRGATLIYATHIFDGLEEWATHLAYIQEGELNRYSKLSELNELKTSVNLLTVVENWLRAETKQEKKKKKEPIKAPPAQSQKPTSASPFMSSS RHMAYYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10024914 [exp]	0	1
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10009501 [exp]	2.0	0.8154
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10037836 [exp]	2.0	0.8188
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10030492 [exp]	3.5	0.8056
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10043437 [exp]	4.5	0.7862
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10011696 [exp]	5.0	0.7664
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10030084 [exp]	16.9	0.7276
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10027270 [exp]	17.7	0.6830
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10017751 [exp]	17.9	0.7296
AT1G23880			NHL domain-containing protein ...		Lus10030850 [exp]	18.7	0.7446
AT5G13030			unknown protein		Lus10031224 [exp]	18.9	0.7390

Compare expression of checked genes

Lus10024914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.