Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20470 63 / 4e-12 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G03920 59 / 6e-11 Protein kinase family protein (.1) AT4G14350 53 / 1e-08 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT3G23310 49 / 2e-07 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G30640 49 / 3e-07 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033911 [exp] 64 / 1e-12 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10011814 [exp] 56 / 8e-10 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10021176 [exp] 54 / 5e-09 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10022914 [exp] 0 / 1 AT1G61110 54 / 7e-09 NAC domain containing protein 25 (.1) Lus10024907 [exp] 0 / 1 AT5G62380 52 / 3e-08 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10003541 [exp] 0 / 1 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G167800 [exp] 61 / 1e-11 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.005G226700 [exp] 60 / 4e-11 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G036200 [exp] 58 / 1e-10 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.010G070600 [exp] 57 / 5e-10 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.011G157000 [exp] 44 / 1e-05 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024915 pacid=23179003 polypeptide=Lus10024915 locus=Lus10024915.g ID=Lus10024915.BGIv1.0 annot-version=v1.0 ATGTATACGACATGCAAGCTACCTTTATTCCAGAGGTCAATGATGAGTTGGATACACAAAACTTTCGAAAAATTCGACGAGATGCTTTCTTCGAAAGATC TAAACTTTGTGGGATACACGTACAAGAACTTTGAAATTGTGAATGATTATCAAGTACCCTGGATGGTAAAGCTCGGATGCATTCGTCTCACTGAAGAGAC TCCTCCAGACCTCGTCCTCACTGTAAAGATCACGGTTGAAGATCACGCTGGGCAATTGCCCATGAACTTCTCGAGGAGGTATTGGATGACTTGTTTGCCC GACGGGCGGAATCGAGAACCTACCGGAGCTCCGGGAATCATCATCTTGATTAGCAGATTGGTGCTAGTCAGGGAGGATTGGTCGCTGGAGGAACCGCAAA TCGGAATGTGGATGGCGGGGGATGGACGCCATTGA
AA sequence Show only first row Show all	>Lus10024915 pacid=23179003 polypeptide=Lus10024915 locus=Lus10024915.g ID=Lus10024915.BGIv1.0 annot-version=v1.0 MYTTCKLPLFQRSMMSWIHKTFEKFDEMLSSKDLNFVGYTYKNFEIVNDYQVPWMVKLGCIRLTEETPPDLVLTVKITVEDHAGQLPMNFSRRYWMTCLP DGRNREPTGAPGIIILISRLVLVREDWSLEEPQIGMWMAGDGRH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10024915 [exp]	0	1
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	8.6	0.9531
AT1G18900			Pentatricopeptide repeat (PPR)...		Lus10033110 [exp]	14.8	0.9382
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10020150 [exp]	16.2	0.9191
AT1G47530			MATE efflux family protein (.1...		Lus10042344 [exp]	22.0	0.9424
AT1G71696		SOL1.4, SOL1.3,...	SUPPRESSOR OF LLP1 1, carboxyp...		Lus10028694 [exp]	27.7	0.9361
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021258 [exp]	29.7	0.9410
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	30.4	0.9360
AT1G18500		MAML-4, IPMS1	ISOPROPYLMALATE SYNTHASE 1, me...		Lus10019574 [exp]	31.7	0.9332
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	32.1	0.9388
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004120 [exp]	32.8	0.9267

Compare expression of checked genes

Lus10024915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.