Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14340 621 / 0 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT3G23340 612 / 0 CKL10 casein kinase I-like 10 (.1) AT4G28540 603 / 0 CKL6, PAPK1 casein kinase I-like 6 (.1) AT1G03930 602 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G43320 579 / 0 CKL8 casein kinase I-like 8 (.1) AT5G44100 578 / 0 CKL7 casein kinase I-like 7 (.1) AT1G04440 571 / 0 CKL13 casein kinase like 13 (.1) AT4G26100 529 / 0 CKL1, CK1 casein kinase 1 (.1) AT5G57015 522 / 0 CKL12 casein kinase I-like 12 (.1) AT1G72710 520 / 0 CKL2 casein kinase 1-like protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022908 [exp] 812 / 0 AT4G28540 625 / 0.0 casein kinase I-like 6 (.1) Lus10033913 [exp] 780 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10021175 [exp] 616 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10011812 [exp] 605 / 0 AT4G14340 705 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10042570 [exp] 589 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10014661 [exp] 584 / 0 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 584 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10000553 [exp] 577 / 0 AT3G23340 623 / 0.0 casein kinase I-like 10 (.1) Lus10027628 [exp] 527 / 0 AT4G26100 702 / 0.0 casein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036000 [exp] 717 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.005G226900 [exp] 716 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.010G070400 [exp] 639 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.008G168100 [exp] 636 / 0 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 588 / 0 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.003G043500 [exp] 535 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 532 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 531 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 530 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G084500 [exp] 480 / 1e-167 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10024916 pacid=23178921 polypeptide=Lus10024916 locus=Lus10024916.g ID=Lus10024916.BGIv1.0 annot-version=v1.0 ATGGAGAAGATGAAGGTTGACCATATCGTCGGTGGTAAGTTTAAGCTTGGGAGGAAGATTGGGAGTGGATCTTTTGGAGAGCTCTATCTGGGTGTAAATG TGCAGACTGGAGAAGAAGTTGCTGTTAAGCTGGAATCTGTGAAGACCAAGCATCCTCAGCTTCAGTATGAGTCAAAGTTGTATATGCTTCTCCAAGGAGG GACTGGAATTCCTCATCTGAAGTGGTTTGGAGTTGAGGTGGAGTATAATATCATGGTTATTGATCTTCTTGGACCGAGTTTGGAAGATCTATTCAACTAC TGTAATAGGAAATTTACTTTGAAAACAGTGCTAATGCTTGCTGATCAACTGATTAATAGGGTTGAATATATGCATTCAAGAGGATTTCTTCACCGTGACA TAAAGCCTGATAACTTCTTGATGGGCCTAGGTCGCAAAGCCAATCAGGTCTATGTAATTGATTATGGCCTTGCAAAGAAATACAGGGATCTCCAGACTCA CAAGCACATTCCATACAGAGAAAATAAGAACCTAACAGGCACTGCTCGTTATGCAAGTGTCAACACCCACCTCGGAGTTGGTCAGTTGTTTAGACTCCGA CCATTCTCCTCATCGCCTTTTGCTTTTGTGGAGTTGAGTTACGAGTTTCTGATTCCTTTTCTTCTGTTGTCAGAGCAAAGCAGAAGGGATGATTTGGAGT CACTTGGATATGTGCTTATGTATTTCCTCCGAGGAAGCCTCCCATGGCAAGGATTAAAGGCTGGCACAAAAAAGCAGAAATATGACAGGATCAGTGAAAA GAAAGTGCAGACTTCAATAGAGTCTCTTTGTAAATCTTATCCATCCGAGTTTGTATCCTACTTCCACTACTGTCGCTCATTGCGATTCGAAGATAAACCA GATTACTCGTATTTGAAGAGGCTTTTCCGGGACTTATTTATTCGGGAAGGTTATCAATTCGACTATGTGTTCGACTGGACTGTACTGAAGTATCCTCAAG TTGGTTCCAGCTCTAGAGCACGAGTAAGTGTGAAACCAGGTCCTGCACTCGCGGCAGGACCATCTACTGTAAGAGTGCCCGAGAGAGTTTCTGTTGGCAA AGAGATCCGGGAGAGATTCTCAGGCGCTGTTGAGGCTTTTTCAACCAGGAGAATCACTGGTGCTAGCCCGCTCGACAATTCGAGAGCCAGGACAAATGAG ACTCAACAGCAGCCTGAGGCGGAGAAAGGTCGCAGCACGTCTAGGCATGGAAGTAGCTCGAGACGAGCCATCGTTCCGAACGGCAAGCCAAGTTCCTCAG GTGATCACGGAGATGGTCGCCTGACGAGAACACACCATTCTTCTGGCCATATCTCTTCCACACAAAGAATCCTACCTGCGTACGAACCCATCAAGTCATC CGGTGCTCGAGCAGCTGCTGCCAAATCCCGCGAGGAAAATCTAAAGAGCTTCGAGTTCCTCACCCTGAACCGACGATGA
AA sequence Show only first row Show all	>Lus10024916 pacid=23178921 polypeptide=Lus10024916 locus=Lus10024916.g ID=Lus10024916.BGIv1.0 annot-version=v1.0 MEKMKVDHIVGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESVKTKHPQLQYESKLYMLLQGGTGIPHLKWFGVEVEYNIMVIDLLGPSLEDLFNY CNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVGQLFRLR PFSSSPFAFVELSYEFLIPFLLLSEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKVQTSIESLCKSYPSEFVSYFHYCRSLRFEDKP DYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQVGSSSRARVSVKPGPALAAGPSTVRVPERVSVGKEIRERFSGAVEAFSTRRITGASPLDNSRARTNE TQQQPEAEKGRSTSRHGSSSRRAIVPNGKPSSSGDHGDGRLTRTHHSSGHISSTQRILPAYEPIKSSGARAAAAKSREENLKSFEFLTLNRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10024916 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10024941 [exp]	1.4	0.9500
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10038510 [exp]	7.7	0.9305
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	9.3	0.9499
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10010531 [exp]	11.7	0.9046
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10033243 [exp]	12.8	0.8960
AT5G47900			Protein of unknown function (D...		Lus10010030 [exp]	14.0	0.9234
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10011445 [exp]	14.1	0.9104
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	14.2	0.9342
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10040861 [exp]	14.8	0.9019
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10008117 [exp]	18.6	0.9112

Compare expression of checked genes

Lus10024916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.