Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44090 724 / 0 Calcium-binding EF-hand family protein (.1) AT1G03960 712 / 0 Calcium-binding EF hand family protein (.1.2) AT5G28850 692 / 0 Calcium-binding EF-hand family protein (.1.2) AT5G28900 691 / 0 Calcium-binding EF-hand family protein (.1) AT1G54450 690 / 0 Calcium-binding EF-hand family protein (.1) AT5G18580 94 / 4e-20 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022907 [exp] 1037 / 0 AT5G44090 737 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008247 [exp] 878 / 0 AT5G44090 774 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10003628 [exp] 875 / 0 AT5G44090 775 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10021174 [exp] 715 / 0 AT5G28850 804 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10011811 [exp] 706 / 0 AT5G28850 797 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10029614 [exp] 705 / 0 AT5G28850 792 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10032772 [exp] 701 / 0 AT5G28850 778 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10027963 [exp] 687 / 0 AT5G28850 771 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10008193 [exp] 674 / 0 AT5G28850 768 / 0.0 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G035800 [exp] 778 / 0 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.005G227100 [exp] 761 / 0 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.019G019500 [exp] 734 / 0 AT5G28850 885 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.013G047300 [exp] 724 / 0 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.010G022300 [exp] 92 / 2e-19 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.008G215300 [exp] 89 / 2e-18 AT5G18580 830 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024917 pacid=23178982 polypeptide=Lus10024917 locus=Lus10024917.g ID=Lus10024917.BGIv1.0 annot-version=v1.0 ATGGATATTGATACAGGAGGAAGGGATGACGTCAGCATCTACTTAGACCCTGAACTATTGCAACTTCCCGAGGTGTCTCCATTTGAGCTCAAGCCGACCA TTCAAATAGCTGAAGAGCTGTTTTCTCAATGGCTCTCTCTCCCTGACACTAGCCGACTGGCTAAATTGTTGATTAGAGATGCAAAAGCTGGTCTGCCAAT TACTGCTCATGGAATCTCTTCCACCGGAGGAAGCAATTCGCTGATGAATGTCAATCCGCCTCCACTTTCGCCAAGGAGTTCATCTCCTCGCACTTCAAAG TATAGAGCAAGCCCTTTCTCTATCACATCTCCTCCAAAATTCGCAACTGAACCAGTTCAGGAGACTATACCTCAGTTTTACTACCAAAATGGTCGTCCAC CTGCAAATGAGCTGAAGGAACAGTGTCTTTCTAAGATTAACAAACTATTCAATAGTAATCTTGACGGGCTGTACATAGATGAATTCAAATATGTTACAAA GGAAGTTTGCAAGCTGCCATCCTTCTTCTCCTCCGCGCTTTTCAGGCGGATTGATACAGAATGCTATGGGATAGTGACAAGGGATGCATTTATAAAATAT TGGGTAGAGAGTAACATGCTCACCATGGATATAGCAACTCAAATATTTGAAATTTTAAAGAAGCCTGAATGTCGGTTCCTAACTAAGGCTGACTTCAAGC CAGTTCTTGAGGATCTGTTAGCTACCCACCCAGGGTTGGAATTTTTACAGAATGCACCTGAGTTTCAAGAGAAATATGCTGAAACTGTCATCTACAGAAT ATTTTACTACATCAATAAATCAGGAAATGGCCGTCTAACCCTCAGAGAGTTGAAGCATAGCAACCTTATCCGTGTCATGCAACAAGTTGATAAAGAAGAG GAAATTAACAAAATTCTAAGGTACTTCTCTTACGAGCATTTCTATGTGATATACTGCAAATTTTGGGAGCTGGATACAGACCATGATTACTTGCTCGACC GAGAGGATCTCATCAAATATAGTAATCATTGCCTTACATATAGAATCGTTGATAGAATATTTTCACAGGTGCCGAGGAAGTTCACTAGCTATATGAAAGA AAAGATGAGCTATGAAGATTTTGTTTATTTCATACTGTCAGAAGAGGATAAATCTTCCGAACCTAGCCTTGAATATTGGTTCAAATGCATCGATTTGGAC GGGAATGGCGCCCTTACATCCAGCGAATTGCAGTACTTTTACGAGGAGCAGCTACACCGAATGAGCTGCATGTCCCAGGAACCTGTACTATTTCAAGATA TATTATGTCAAATAGTCGACATGATTTCGCCTGAGAAGGACGGTTATATCACGTTGCGGGACTTGAAAAGGAGCAAACTTTCGGGCAACATGTTCAATAT TTTGTTCAACCTGAACAAGTTTGTGGCTTTCGAAAGCCGCAACCCCTTTCTCATCAACCAGGAACGCGGGGAACCGATTTTAACAGAGTGGGATCGTTTT GCACATAGAGAATATATCAGGCTTTCAATGGAGGATGACGCTGAAGTTGTTTCAAATGGGAATTTGGAAGCGTGGGAAGAAGTATCATCTCACGAGGCTC CATTCTAA
AA sequence Show only first row Show all	>Lus10024917 pacid=23178982 polypeptide=Lus10024917 locus=Lus10024917.g ID=Lus10024917.BGIv1.0 annot-version=v1.0 MDIDTGGRDDVSIYLDPELLQLPEVSPFELKPTIQIAEELFSQWLSLPDTSRLAKLLIRDAKAGLPITAHGISSTGGSNSLMNVNPPPLSPRSSSPRTSK YRASPFSITSPPKFATEPVQETIPQFYYQNGRPPANELKEQCLSKINKLFNSNLDGLYIDEFKYVTKEVCKLPSFFSSALFRRIDTECYGIVTRDAFIKY WVESNMLTMDIATQIFEILKKPECRFLTKADFKPVLEDLLATHPGLEFLQNAPEFQEKYAETVIYRIFYYINKSGNGRLTLRELKHSNLIRVMQQVDKEE EINKILRYFSYEHFYVIYCKFWELDTDHDYLLDREDLIKYSNHCLTYRIVDRIFSQVPRKFTSYMKEKMSYEDFVYFILSEEDKSSEPSLEYWFKCIDLD GNGALTSSELQYFYEEQLHRMSCMSQEPVLFQDILCQIVDMISPEKDGYITLRDLKRSKLSGNMFNILFNLNKFVAFESRNPFLINQERGEPILTEWDRF AHREYIRLSMEDDAEVVSNGNLEAWEEVSSHEAPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44090			Calcium-binding EF-hand family...		Lus10024917 [exp]	0	1
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	10.1	0.7496
AT5G65540			unknown protein		Lus10035950 [exp]	11.5	0.7294
AT2G29200		APUM1	pumilio 1 (.1)		Lus10002708 [exp]	11.7	0.7323
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10017464 [exp]	12.0	0.7127
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031289 [exp]	19.9	0.7438
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	20.8	0.7237
AT5G50340			ATP-dependent peptidases;nucle...		Lus10038258 [exp]	23.0	0.7200
AT5G15680			ARM repeat superfamily protein...		Lus10019255 [exp]	27.1	0.7016
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10025351 [exp]	32.9	0.7000
AT5G48440			FAD-dependent oxidoreductase f...		Lus10038241 [exp]	37.3	0.7330

Compare expression of checked genes

Lus10024917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.