Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18520 587 / 0 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT5G61060 238 / 8e-71 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT5G61070 229 / 6e-67 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT4G33470 149 / 2e-39 HDA14, ATHDA14 histone deacetylase 14 (.1) AT1G08460 129 / 7e-33 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT5G63110 102 / 4e-23 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT3G44680 96 / 6e-21 HDA09, HDA9 histone deacetylase 9 (.1) AT4G38130 91 / 4e-19 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT4G09784 74 / 2e-16 unknown protein AT5G35600 59 / 3e-09 HDA7 histone deacetylase7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022906 [exp] 872 / 0 AT3G18520 582 / 0.0 histone deacetylase 15 (.1.2) Lus10034689 [exp] 238 / 3e-70 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10017845 [exp] 228 / 9e-67 AT5G61060 868 / 0.0 histone deacetylase 5 (.1.2) Lus10010889 [exp] 150 / 4e-40 AT4G33470 610 / 0.0 histone deacetylase 14 (.1) Lus10013343 [exp] 144 / 3e-38 AT1G08460 559 / 0.0 histone deacetylase 8 (.1) Lus10001850 [exp] 143 / 9e-38 AT1G08460 558 / 0.0 histone deacetylase 8 (.1) Lus10043337 [exp] 110 / 8e-26 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10019486 [exp] 108 / 3e-25 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10012713 [exp] 106 / 1e-24 AT4G33470 508 / 2e-180 histone deacetylase 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060400 [exp] 655 / 0 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.004G092900 [exp] 240 / 2e-71 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.005G064200 [exp] 151 / 2e-40 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.009G020500 [exp] 128 / 1e-32 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.015G082500 [exp] 104 / 7e-24 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.012G083800 [exp] 103 / 1e-23 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.001G460000 [exp] 98 / 1e-21 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.004G209800 [exp] 95 / 1e-20 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.009G170700 [exp] 94 / 4e-20 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.006G230300 [exp] 56 / 3e-08 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10024919 pacid=23178908 polypeptide=Lus10024919 locus=Lus10024919.g ID=Lus10024919.BGIv1.0 annot-version=v1.0 ATGAGGGGAGATTTGACGTTCCAAGACATGTGCAACGACGTAGATTGGTTTGAGGATGAGGAAGACGAGGAAGACGATAGTGACTGGGAGCCGGTTGCAA AGCCTGTGATGGAAATGCTGAGCTGGTTCTGTGTCAACTGTACAATGATGAATCTTGACTGTGTTGTCCACTGTTCAACATGTGGAGAGCATAAAGATTC TGGTATCCTGAAGTATGGGTTTTACGCATCTCCTTCTGCCAGGGTTGACTCTTACGTGGACGGGCAGATAGAGAGCAATGGCCATGAAATTGGCTCCCAA TCATCAGCCTTAAGTGGTCCCACAGCAGTTGGTTTTGATGAGAGAATGTTGCTGCATGAAGAGGTTCAGGTGAAGTCACATCCACATCCTGAAAGACCAG ATCGCCTTCAAGCCATAGCTGCCAGTCTTGCAACCGCTGGTATATTTCCTGGAAGATGTCAGGCTATTGCTCCGAGAGAGATTACTCCGGAAGAACTGAA AAGGGTACACTCAATGGAGAACATTCAAACTGTAGACCTAACCAGCCATATCTACTCTAGTTATTTCACCCCCGACACTTATGCAAATGAGCATTCAGCT CGTGCTGCTAGACTTGCAGCAGGTTTGTGTGCTGATCTTGCTTCAGCAATTTTCTCTGGACGTGCAAAAAATGGTTTTGCTCTGATTAGGCCTCCTGGTC ATCATGCTGGAGTGACGCAGGCTATGGGATTCTGCCTTCATAACAATGCAGCAGTTGCAGCATTAGCTGCACAGGTTGCTGGTGCCAAGAGGGTGTTAAT AGTTGACTGGGATGTTCACCATGGAAATGGCACACAAGAAATTTTTGATGATAACAAATCGGTTCTCTACATATCCTTGCATAGACACGAGGGCGGGAAA TTTTATCCCGGTACTGGATCTGCTAATGAGGTTGGTTCGAATGGTGCGGAGGGATATTGCGTAAACATTCCATGGAGTTGCAGTGGAGTAGGGGATAAAG ATTACATTTTTGCATTTCAGCATGTCGTGCTACCTATAGCCACCGAGTTTGCTCCTGACTTCACCATCATATCAGCTGGATTTGATGCAGCAAGGGGTGA TCCACTGGGATGCTGTGATGTGACTCCTGTTGGATATGCACAAATGACGCAGATGTTGTCTAATCTCACAGGAGGGAAGTTACTTGTCATTCTTGAGGGC GGCTACAATCTGCGCTCCATTTCGTCTTCCGCCACTGCAGTAGTCAAGGTATTGCTGGGTGAAAGTCCTTCAACCGAAGTTGAAGGAGAAATTGTTCCAT CAAGAGCTGGCCTGCAAACTGTGGTTGAAGTTCTGAAGATTCAGAAGAACTTCTGGTCTTGTGCTGATTCAGGCTTAGAACAACTGCAACCACAGGGTCC TGATGATAAAAAGAAGAGAAGCAAAAAGAGGCGAAGAGCAGAGCCTCCGGTGTGGTGGAAATGGGGAAGAAAGCGGCTGCTATACAATTTCATGACGACG AAGGTTCGCCGCGCAAAGCCAATGGAGGAGAGTGAACGGAAGTGGAAAGAGATGCTTGGTTTGTGA
AA sequence Show only first row Show all	>Lus10024919 pacid=23178908 polypeptide=Lus10024919 locus=Lus10024919.g ID=Lus10024919.BGIv1.0 annot-version=v1.0 MRGDLTFQDMCNDVDWFEDEEDEEDDSDWEPVAKPVMEMLSWFCVNCTMMNLDCVVHCSTCGEHKDSGILKYGFYASPSARVDSYVDGQIESNGHEIGSQ SSALSGPTAVGFDERMLLHEEVQVKSHPHPERPDRLQAIAASLATAGIFPGRCQAIAPREITPEELKRVHSMENIQTVDLTSHIYSSYFTPDTYANEHSA RAARLAAGLCADLASAIFSGRAKNGFALIRPPGHHAGVTQAMGFCLHNNAAVAALAAQVAGAKRVLIVDWDVHHGNGTQEIFDDNKSVLYISLHRHEGGK FYPGTGSANEVGSNGAEGYCVNIPWSCSGVGDKDYIFAFQHVVLPIATEFAPDFTIISAGFDAARGDPLGCCDVTPVGYAQMTQMLSNLTGGKLLVILEG GYNLRSISSSATAVVKVLLGESPSTEVEGEIVPSRAGLQTVVEVLKIQKNFWSCADSGLEQLQPQGPDDKKKRSKKRRRAEPPVWWKWGRKRLLYNFMTT KVRRAKPMEESERKWKEMLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	0	1
AT1G04030			unknown protein		Lus10029611 [exp]	1.4	0.9296
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	2.4	0.9265
AT5G58370			P-loop containing nucleoside t...		Lus10009919 [exp]	2.6	0.9128
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	3.9	0.9183
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10037327 [exp]	4.9	0.9258
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	5.7	0.9227
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	8.1	0.8962
AT1G73450			Protein kinase superfamily pro...		Lus10031902 [exp]	9.2	0.8868
AT1G20370			Pseudouridine synthase family ...		Lus10005641 [exp]	12.0	0.8716
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009016 [exp]	12.4	0.8745

Compare expression of checked genes

Lus10024919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.