Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28550 609 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 603 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G27100 476 / 6e-167 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 452 / 9e-158 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 170 / 2e-46 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT3G59570 167 / 3e-45 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 139 / 1e-35 RabGAP/TBC domain-containing protein (.1.2) AT5G53570 123 / 2e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G41940 123 / 2e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G49350 117 / 2e-28 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022905 [exp] 825 / 0 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10011159 [exp] 476 / 2e-166 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10043064 [exp] 348 / 1e-115 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10004802 [exp] 172 / 9e-48 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10006646 [exp] 147 / 2e-38 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10027697 [exp] 137 / 6e-37 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 141 / 2e-36 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10039968 [exp] 141 / 2e-36 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10023237 [exp] 128 / 5e-32 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G227400 [exp] 645 / 0 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.011G135300 [exp] 478 / 2e-167 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.001G419100 [exp] 469 / 4e-164 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.007G132900 [exp] 173 / 1e-47 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.017G023200 [exp] 170 / 1e-46 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.006G066300 [exp] 135 / 2e-34 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.018G127500 [exp] 135 / 3e-34 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.015G007400 [exp] 122 / 4e-30 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 121 / 1e-29 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 118 / 1e-28 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10024920 pacid=23178970 polypeptide=Lus10024920 locus=Lus10024920.g ID=Lus10024920.BGIv1.0 annot-version=v1.0 ATGGTTCTTTGTGGCATGACCAGTGGAGACGCCGAGATCGGCGATTTCTACCCGGTTAGCCCCGAATGCATAGCTGATGTTCCCAAGACCCGATTCAAGC CTCGAGCAGGGAAAACCCTTAGCGCAAGAAGGTGGCATGCTGCATTTTCTGAAGATGGCCATTTGGATATTGCTCCTGTCCTCAGAAGAATCCAAAGAGG GGGTGTTCATCCTGCTATTAAAGGGTTAGCCTGGGAATTCTTGTTGGGAGTCTTTGATCCTAACAGCACATTTGAGGATCGGAATGATATCAGGCAGCGC AGAAGGGAGCAGTATAACAGTTGGAAAACTGAATGCCAAGAGATGTGTCCAGTTATTGGTAGTGGGAAGTTTCTTACAACACCTGTTATTGGAGACGATG GACAACCAATAACGGACTCTGATGAAGGATGGCATGCAACTGAAGCTGTTACTGATAAGAAAGTGCTGCAATGGATGCTAACTTTGCATCAAATTGGTTT GGATGTTGTTCGTACAGATCAGTCACTTGAATTTTATCGAAGCGAAGTTAATTCGGCAAAACTTTGGGATATACTTGTAGTGTATTCTTGGATAGACACT GACATTGGTTATGTACAAGGTATGAATGATATATGCTCTCCAATGGTAATTCTGCTTGAAAATGATGCCGATGCCTATTGGTGTTTCGATCATGCAATGC GAAGATTGAGGGAAAACTTCAGGACGAGCACCACTTCCATAGGAGTGCAGGCTCAGCTTAGTACACTTTCTCAAGTTATCAAAACCGTGGACCCAAAGCT TCACCAGCACCTGGAGGATTTAGATGGAGGTGAATATTTGTTCGCGTTTCGGATGCTGATGGTGCTTTTCCGGAGGGAATTTTCATTTGTAGACTCGTTA TATCTATGGGAGCTAATGTGGGCGATGGAGTACAACCCAAACATCTTCACAATGTATGAAGAGTCAAGAGAGGCCTCTGAAAAAGAGGCGGCCGAGGCTG GTGCACCCTTATCAAATAACAAGCAGCTAAACCAGTATGGAAAGTTCGAAAGGAAATACATACAGACTGGCACTACAGACCAGCATAGTGCACTCTCTAT CTTCCTCGTCGCAAGTGTTCTCGAGGCTAAGAACAAGAAGATCTTGAAAGAGGCTAAGGGTCTGGATGATGTTGTCCAGATACTGGGTGATGCCACAGGT AACTTGGATGCTAAAAAGGTATGCCAAGAGGCCTTGAAGATCCACAAAAAATACCTCAGCAAGGCTGCCACTGAGGGTCAATAG
AA sequence Show only first row Show all	>Lus10024920 pacid=23178970 polypeptide=Lus10024920 locus=Lus10024920.g ID=Lus10024920.BGIv1.0 annot-version=v1.0 MVLCGMTSGDAEIGDFYPVSPECIADVPKTRFKPRAGKTLSARRWHAAFSEDGHLDIAPVLRRIQRGGVHPAIKGLAWEFLLGVFDPNSTFEDRNDIRQR RREQYNSWKTECQEMCPVIGSGKFLTTPVIGDDGQPITDSDEGWHATEAVTDKKVLQWMLTLHQIGLDVVRTDQSLEFYRSEVNSAKLWDILVVYSWIDT DIGYVQGMNDICSPMVILLENDADAYWCFDHAMRRLRENFRTSTTSIGVQAQLSTLSQVIKTVDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDSL YLWELMWAMEYNPNIFTMYEESREASEKEAAEAGAPLSNNKQLNQYGKFERKYIQTGTTDQHSALSIFLVASVLEAKNKKILKEAKGLDDVVQILGDATG NLDAKKVCQEALKIHKKYLSKAATEGQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10024920 [exp]	0	1
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10022905 [exp]	2.0	0.8777
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	6.6	0.8859
AT1G45207			Remorin family protein (.2)		Lus10010227 [exp]	7.3	0.8418
AT1G47380			Protein phosphatase 2C family ...		Lus10006485 [exp]	7.7	0.8438
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10017889 [exp]	11.7	0.8390
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	12.2	0.8802
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	14.3	0.8827
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10042570 [exp]	14.6	0.8236
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Lus10012300 [exp]	17.5	0.8674
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10042148 [exp]	18.5	0.8644

Compare expression of checked genes

Lus10024920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.