Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44070 563 / 0 ATPCS1, ARA8, CAD1 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) AT1G03980 526 / 0 ATPCS2 phytochelatin synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003622 [exp] 725 / 0 AT5G44070 635 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Lus10008241 [exp] 505 / 4e-175 AT1G03980 514 / 0.0 phytochelatin synthase 2 (.1) Lus10038621 [exp] 116 / 4e-31 AT5G44070 109 / 8e-30 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Lus10003623 [exp] 71 / 1e-13 AT5G44070 69 / 1e-13 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195800 [exp] 661 / 0 AT5G44070 644 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Potri.014G195900 [exp] 524 / 0 AT5G44070 543 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05023 [flax] [poplar] Phytochelatin Phytochelatin synthase CL0125 [flax] [poplar] PF09328 [flax] [poplar] Phytochelatin_C Domain of unknown function (DUF1984)
Representative CDS sequence Show only first row Show all	>Lus10024921 pacid=23178879 polypeptide=Lus10024921 locus=Lus10024921.g ID=Lus10024921.BGIv1.0 annot-version=v1.0 ATGGCGATGGCTGGGCTTTACCGCCGGATCCTTCCTTCTCCGCCTGCTATCGATTTCGCTTCTTCCGAAGGAAAGCAAATTTTCCTTGAAGCGGTTCAAA ATGGAACTATGGAAGGCTTCTTTAAGTTGATATCGTACTTCCAGACGCAGTCTGAGCCTGCTTATTGCGGTCTGGCGAGCCTCTCTATGGTCTTGAATGC ACTTTCGATTGACCCTCGCAGGAAATGGAAAGGGAACACTGAGAATACTCGTGATCCTAATGCAGGACCGTGGAGGTGGTTTGATGAATCCATGTTGGAT TGCTGTGAGCCTTTGGAAAAGGTTAAAGCTGATGGCATTTCGTTTGGGAAAGTTGTTTGCTTGGCACGATGTGCTGGCGCAAAAGTTGAAGCTCGCCGCA CCAGTCAAACTACCATTGATGACTTCCGTAATCATGTTATTCGGTGTTCCACTTCTGATAATTGTCATGTGATTTCTTCGTATCATAGAGGGGTTTTTGA ACAGACAGGGACTGGTCACTTTTCACCAATTGGAGGCTATCATGCTGGAAAAGACATGGCACTGATTCTGGATGTTGCACGCTTTAAGTATCCTCCACAC TGGGTACCACTAAGTCTTCTTTGGGAAGCCATGGACAAAATTGATGTGACAACTGGGCATCGTAGAGGGTTCATACTCTTATCACGGCCTCAGACCGAGC CGGGACTACTTTATACCCTGAGCTGTAAGCAAGAGAGTTGGACCAGCATCGCAAAGTATCTAATTGACGAAGTTCCTGTGCTCCTAAAGTCCGAAGATGT GAAAGATATTGACAAAGTGCTCGATGTTGTTGTTTCGTCTCTCCCATCGGATTTTTGTGATTTCATCAAGTGGGTTGCTGAAGTTCGGAGACAAGAAGAT GGCGGCGAAAACATAAGCCAAGAGGAGAAAGAGCGTCTAGCCATGAAGGAGGAGATACTAAAGCAAGTGAGGGACACTGTCCTTTTCAAACATGTCACAG CACTTTTGTCTTTGACAACACCTTGTCGAAATATGCTAACCAAGATCAAAGACGGTGGGGATGATCTCTCCAACATCGCGATGAAGCTCTGCTGCCAAGG TGCCGAGATTTTGTCGGGGGAGTCTTTCAAAGGGTGCAGTTGCATGAAAACCTGCGTAAAATGCTTGAAGGGGAATGGCGATGATTCAGTCACAGTGGTC TCTGGAACCGTTTTTAACGGTGGAAGTCAGCAAGGACTCGAGGTCCTGGTTCCTTCATCTGAGAAGAAGCAGAATTCGTGTAACTGTGGCCCGAGTAACC GGATCTACCCGGCTAGCAGTGATGTCCTGACAGCACTGTTATTGGCTCTGCCTCCTGAAACATGGTCTGGCATCAAAGACGAAAAGCTTCTCGACGAAGT TTGTACTCTCGTCTCGAGTCAAAGTCTCTCTGTCTTGCTCCAAGAAGAGGCAACAGCTACGCCATCTAAAAGTATGCTTGAGGAACAAGGAAGAAGAAGA CTTAGCCTCGCCACTATGATAGCTTTAGCCAAAGGGTTCATCGCCATTCTCTACAAAGATAAACGTAAGCAAAGATCAGTAATAACAGAAAGAAAGGATA CAATTCGACCCACCGTATTTATCATGATATTTCTATTCTGCGATTTCCCTGACAGTTCCCCGACTCAGATCTCCAATATTGTCTCACAACTTCGTAGTGC TATCATCCCCGATACCAATTTGAATATGTTCGATTCACGATTACTCGAAAGTTATCCTCGAAGAGCATATGAAAAAGCCTTCTTCCTCCCTCGCACATGC ACCGTCGATAAGCCAATAGGATCAATACTTCATGTTAAAAAACAGTTATGTGCAGTAATGTCTCGTAATCATAAGAGGAAATATCGAGAGAAGTGA
AA sequence Show only first row Show all	>Lus10024921 pacid=23178879 polypeptide=Lus10024921 locus=Lus10024921.g ID=Lus10024921.BGIv1.0 annot-version=v1.0 MAMAGLYRRILPSPPAIDFASSEGKQIFLEAVQNGTMEGFFKLISYFQTQSEPAYCGLASLSMVLNALSIDPRRKWKGNTENTRDPNAGPWRWFDESMLD CCEPLEKVKADGISFGKVVCLARCAGAKVEARRTSQTTIDDFRNHVIRCSTSDNCHVISSYHRGVFEQTGTGHFSPIGGYHAGKDMALILDVARFKYPPH WVPLSLLWEAMDKIDVTTGHRRGFILLSRPQTEPGLLYTLSCKQESWTSIAKYLIDEVPVLLKSEDVKDIDKVLDVVVSSLPSDFCDFIKWVAEVRRQED GGENISQEEKERLAMKEEILKQVRDTVLFKHVTALLSLTTPCRNMLTKIKDGGDDLSNIAMKLCCQGAEILSGESFKGCSCMKTCVKCLKGNGDDSVTVV SGTVFNGGSQQGLEVLVPSSEKKQNSCNCGPSNRIYPASSDVLTALLLALPPETWSGIKDEKLLDEVCTLVSSQSLSVLLQEEATATPSKSMLEEQGRRR LSLATMIALAKGFIAILYKDKRKQRSVITERKDTIRPTVFIMIFLFCDFPDSSPTQISNIVSQLRSAIIPDTNLNMFDSRLLESYPRRAYEKAFFLPRTC TVDKPIGSILHVKKQLCAVMSRNHKRKYREK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10024921 [exp]	0	1
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Lus10008423 [exp]	57.4	0.8791
AT1G11320			unknown protein		Lus10017280 [exp]	65.1	0.8958
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002767 [exp]	75.4	0.8912
AT2G38000			chaperone protein dnaJ-related...		Lus10017189 [exp]	86.7	0.8649
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10020150 [exp]	128.3	0.8740
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10034835 [exp]	148.7	0.8849
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10038530 [exp]	171.4	0.8801
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	186.7	0.8744
AT2G28360			SIT4 phosphatase-associated fa...		Lus10016089 [exp]	190.1	0.8663
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10024306 [exp]	240.4	0.8621

Compare expression of checked genes

Lus10024921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.