Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28570 748 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT3G23410 730 / 0 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) AT1G03990 661 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT4G19380 472 / 1e-156 Long-chain fatty alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022903 [exp] 1277 / 0 AT4G28570 837 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10003621 [exp] 957 / 0 AT4G28570 853 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10008239 [exp] 954 / 0 AT4G28570 852 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011800 [exp] 483 / 2e-165 AT3G23410 527 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Lus10035673 [exp] 482 / 3e-160 AT4G19380 793 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10037257 [exp] 466 / 2e-154 AT4G19380 765 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011801 [exp] 180 / 1e-50 AT4G28570 243 / 3e-74 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10021165 [exp] 130 / 7e-34 AT4G28570 148 / 8e-41 Long-chain fatty alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069100 [exp] 776 / 0 AT3G23410 851 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.008G169300 [exp] 759 / 0 AT3G23410 855 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.004G234900 [exp] 464 / 1e-152 AT4G19380 864 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.002G259700 [exp] 207 / 2e-58 AT1G03990 300 / 5e-93 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210150 [exp] 46 / 0.0001 AT4G28570 51 / 4e-06 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210325 [exp] 46 / 0.0001 AT1G03990 67 / 4e-11 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10024922 pacid=23178918 polypeptide=Lus10024922 locus=Lus10024922.g ID=Lus10024922.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAAACAGAGTGCCATACCTTGTTGCGAGGAGGAAGAAGAAGCAATGGTGGTTCATACAGCCATGGTCTGGGTTCTGGTCAGATCCAATCAC TTTCAGCTATCTGTGAAGCCCTCATTCCTCCATTGACACTTCCGGAGAAGAACACTAGTACTGTAATCCCTCTTGACAGTCAGCATCAGCAGAAGAAACA AGCACTCGTTGCCTTCTATGGAGCTTCTGGCTCTCAACCACCAATCCCTCATGAGGTGGCTGAAATAATGGTGAAGAGAGGCTTGTCAGAAGGAGTTTTG GTAGTGAAGCTGGTTCTAAAGATGCTATCGTTCAGACTGGGAACACTCTTGCTTTGTGGGTTTTGCAGCTTGGACTGGAAATGGCCATTCCTCCACAACT TCTCCGAAATCTCCATTGATAAAAGACAGCAGCTTTTAAGGAAATGGAGTGAAGAGAAGTTGATCATACCACTCAGAGTAGTTTTCGCCTTCATCAAGTT CTTCTGCTTGTTCTTCTTCTTCTCCAGGGTTGATGAAGGTATGAAGAATCCATCATGGGAGGCAATTGGGTATGAAGTTGACAGTAGAAAGACTCAATGC AAACAGAAAGGAGATAGACCATTACAAAAGGGGATTGTGGAGACAACAACTTACAAAGACGAGACCGAATTGGTCGAGTCTCTATCCAAAAAGGGAGTTC AAGTGACTGATCAACAAGATGACATACTTAAGATCGAATGTGATGCGGTAATTGTTGGCTCAGGTTGCGGAGGAGGGGTAGCAGCAGCAGTGCTTGCAAG ATCAGGACTGAAAGTGATCGTGCTTGAGAAAGGAAACTACTTTGCCCTGGAAGATTACTCCTCGCTCGAGGGACCTTCGTTGGCCGAATTATACGAGCAC GGAGGAATGTTGGCCACTACCAATGGAAAGACCTTAATACTAGCCGGATCAACAGTAGGTGGAGGGTCAGCTGTTAACTGGTCTGCTTGCATCAAGACCC CTGATTCAGTCCTTAAAGAATGGTCTCAAAAGCTGCCGATTTTCGGAAGCTTGGAGTACAAGGAAGCCATGGATGTTGTGTGGAAGAGGCTTGGCGTGAC GGAGGAGTGTAAACAAGAAGGGTTCCAGAACCAAGTCCTAAGGAAAGGGTGCGAGAAGCTCGGTCTGAAAGTGGATCCGGTTTCGAGGAATTCGTCCGAG GATCATTACTGCGGATCATGCTGCTACGGCTGCAAGACCGGAGACAAGAAGGGTACCGATACTACATGGCTCGTTGATGCCGTGGAGAATGGTGGTTTGA TCGTAACTGGATGCAAGGCCGAACGATTCGTATTGCAAAATGACGAAAGTGGAAAAAGGAAGAGATGTTTGGGAGTGATTGCTAGATCTTCGAATCCGAA GCTTTCCAATAAGACACTGATGATTGAAGCTCAAGTAACAGTTTCAGCTTGTGGAGCATTATTAACTCCGCCATTAATGATCTCGAGCGGGTTAAATAAT CCTAACATCGGGAAGAATCTCCACCTCCATCCAGTCCTGATGGCATGGGGATACTTCCCGGAATCATCAGACCTGAAAGGAAAGGTTTACGAAGGAGGAA TCATCACTTCAATTCATAAAGTGGTTACAGAGGAATCATCCAACACCACCATTGCCATTATAGAGACATCATCTCTAGGACCGGCCTGTTACGCTGCGAT TTTCCCATGGACGTCAGGGCTCGAGCTGAAGGAAAAGATGATCAAGTATCCGAGAACAGCGGTACTTTTCGCGCTGGTGAGGGACGTTGGATCGGGGCAA GTGAAGGTGGAAGGGAGGGTATCTCATCGGCTGGATAAGGTGGACAAGGAGAATCTTCGGACTGGGTTGAGGCAGGCTTTGAGAATCTTGGTGGCGGCTG GAGCTGCTGAAGTCGGAACGCTTCGGAGCGATGGGCAGAGGTTTCAATGTGAAGGAACGAAGGAGAAGGATTTCGAGGCGTTTATCGATGGAGTGGGGGT GACGGGAGGGTTGAAGTCCGGTGACAATCACTGGACTATGTTCTCGTCGGCTCACCAGATGGGGAGCTGTAGGATGGGGGAAACGGAGGAGGACGGTGGA GTTGATGAGAATGGTGAGAGCTGGGAAGCTAAAGGTTTGTTTGTGTGTGATGCATGTGTGCTTCCTAGTGCAGTTGGAGTCAATCCCATGATCACTATTC AGTCAACTGCTTTCTGCATTGCCAATAAGATAGCTGCATCATTCAAGAAATGA
AA sequence Show only first row Show all	>Lus10024922 pacid=23178918 polypeptide=Lus10024922 locus=Lus10024922.g ID=Lus10024922.BGIv1.0 annot-version=v1.0 MEEETECHTLLRGGRRSNGGSYSHGLGSGQIQSLSAICEALIPPLTLPEKNTSTVIPLDSQHQQKKQALVAFYGASGSQPPIPHEVAEIMVKRGLSEGVL VVKLVLKMLSFRLGTLLLCGFCSLDWKWPFLHNFSEISIDKRQQLLRKWSEEKLIIPLRVVFAFIKFFCLFFFFSRVDEGMKNPSWEAIGYEVDSRKTQC KQKGDRPLQKGIVETTTYKDETELVESLSKKGVQVTDQQDDILKIECDAVIVGSGCGGGVAAAVLARSGLKVIVLEKGNYFALEDYSSLEGPSLAELYEH GGMLATTNGKTLILAGSTVGGGSAVNWSACIKTPDSVLKEWSQKLPIFGSLEYKEAMDVVWKRLGVTEECKQEGFQNQVLRKGCEKLGLKVDPVSRNSSE DHYCGSCCYGCKTGDKKGTDTTWLVDAVENGGLIVTGCKAERFVLQNDESGKRKRCLGVIARSSNPKLSNKTLMIEAQVTVSACGALLTPPLMISSGLNN PNIGKNLHLHPVLMAWGYFPESSDLKGKVYEGGIITSIHKVVTEESSNTTIAIIETSSLGPACYAAIFPWTSGLELKEKMIKYPRTAVLFALVRDVGSGQ VKVEGRVSHRLDKVDKENLRTGLRQALRILVAAGAAEVGTLRSDGQRFQCEGTKEKDFEAFIDGVGVTGGLKSGDNHWTMFSSAHQMGSCRMGETEEDGG VDENGESWEAKGLFVCDACVLPSAVGVNPMITIQSTAFCIANKIAASFKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10024922 [exp]	0	1
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10030679 [exp]	1.4	0.8826
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10022903 [exp]	2.0	0.8857
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10025726 [exp]	4.9	0.8593
AT1G12050			fumarylacetoacetase, putative ...		Lus10003798 [exp]	5.2	0.8428
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10005556 [exp]	5.5	0.8662
AT5G01020			Protein kinase superfamily pro...		Lus10037165 [exp]	5.7	0.8266
AT3G62630			Protein of unknown function (D...		Lus10029855 [exp]	6.3	0.8419
AT5G07700	MYB	ATMYB76	myb domain protein 76 (.1)		Lus10019085 [exp]	8.7	0.8249
AT3G62630			Protein of unknown function (D...		Lus10020690 [exp]	11.2	0.8256
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030087 [exp]	11.6	0.8588

Compare expression of checked genes

Lus10024922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.