Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30820 132 / 3e-39 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022901 [exp] 291 / 6e-102 AT4G30820 144 / 4e-44 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103200 [exp] 162 / 7e-51 AT4G30820 179 / 7e-58 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3) Potri.006G180900 [exp] 155 / 5e-48 AT4G30820 171 / 1e-54 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06391 [flax] [poplar] MAT1 CDK-activating kinase assembly factor MAT1
Representative CDS sequence Show only first row Show all	>Lus10024924 pacid=23178932 polypeptide=Lus10024924 locus=Lus10024924.g ID=Lus10024924.BGIv1.0 annot-version=v1.0 ATGGGTGTTGGAAATAATAATCCCAAGGAGATTGCCATCAGAAGAAAGATTTCTAGCATATATAATAGGCGAGAAGAGGATTTCCCGTCATTGTTGGAGT ACAATAATTACTTGGAAAATGTGGAAGACATGATAATGAACTTAGTATCGGGAGTGGACACCCAAGCAATTGAAGCAGAAATTGCCGATTACCAGAAGCA AAATGCTGAACTGATCATGCTTAATCAAGCAAAGAGGGCTGAAGAATATGCTGCGGCTCTTGCTGCGAGTAAAGGTGTTCCACAACAAACAGATACTGAT ATGTTTGTTTCTCCTTCTGCCAACTCATCAAGTTTTCGTATCGTGTCGGGTGCTCAGAACTCTCATGCAGTACTCGGGATAGAGACAGGAGGACAGTATG CGCCGATAATGGCTACTGGGCAGCCACGGCCAATGGGACCGCCAGGGTCTATTGGAGGCGAATATGAAGGCTATGACGACGAAGAAATGATGAGGCTAAG AGCAGAAAGAGGGAGTAGAGCTGGGGGATGGACTTTAGAGCTTAGCAAGAAGAGGTCGCTTGAGGAAGCCTTCTCAACCATTTGGGTTTAG
AA sequence Show only first row Show all	>Lus10024924 pacid=23178932 polypeptide=Lus10024924 locus=Lus10024924.g ID=Lus10024924.BGIv1.0 annot-version=v1.0 MGVGNNNPKEIAIRRKISSIYNRREEDFPSLLEYNNYLENVEDMIMNLVSGVDTQAIEAEIADYQKQNAELIMLNQAKRAEEYAAALAASKGVPQQTDTD MFVSPSANSSSFRIVSGAQNSHAVLGIETGGQYAPIMATGQPRPMGPPGSIGGEYEGYDDEEMMRLRAERGSRAGGWTLELSKKRSLEEAFSTIWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30820			cyclin-dependent kinase-activa...		Lus10024924 [exp]	0	1
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10024636 [exp]	4.2	0.8153
AT1G03330			Small nuclear ribonucleoprotei...		Lus10042686 [exp]	9.6	0.8437
AT3G05760	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10031406 [exp]	10.5	0.8131
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	15.6	0.8256
AT1G66510			AAR2 protein family (.1.2.3)		Lus10028528 [exp]	15.9	0.7878
AT3G15660		ATGRX4	A. THALIANA GLUTAREDOXIN 4, gl...		Lus10008687 [exp]	17.7	0.7969
AT3G19460			Reticulon family protein (.1.2...		Lus10019812 [exp]	19.4	0.8139
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10038139 [exp]	21.6	0.8061
AT5G53900			Serine/threonine-protein kinas...		Lus10005549 [exp]	23.2	0.8071
AT5G03430			phosphoadenosine phosphosulfat...		Lus10026539 [exp]	24.6	0.8089

Compare expression of checked genes

Lus10024924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.