Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28590 325 / 2e-110 MRL7 Mesophyll-cell RNAi Library line 7, unknown protein AT2G31840 121 / 2e-31 MRL7-L Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022899 [exp] 549 / 0 AT4G28590 322 / 3e-109 Mesophyll-cell RNAi Library line 7, unknown protein Lus10033475 [exp] 125 / 9e-34 AT2G31840 351 / 2e-122 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1) Lus10020901 [exp] 125 / 7e-33 AT2G31840 358 / 9e-124 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195600 [exp] 353 / 2e-121 AT4G28590 355 / 4e-122 Mesophyll-cell RNAi Library line 7, unknown protein Potri.007G145700 [exp] 102 / 1e-24 AT2G31840 301 / 8e-101 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024925 pacid=23178860 polypeptide=Lus10024925 locus=Lus10024925.g ID=Lus10024925.BGIv1.0 annot-version=v1.0 ATGCCATTTCTTCAGACCATTCATCTCCCAAATTCCTTATCTCCACTTCCCACCTCCAAAATCCATCCTGCTTCACTTCAACGTCTTTCAACAGTTACTC CTGCTCTTCCTTCATTATGCACTCCTCGTCGATGGAGATACTGCTCCTGCTCAGCTGTACGCGGGAGCTCCGACTCGGAGCCCAAGGCCAAGGCCAGGTC AAGCGCTCGCCGGCGGAAGCCCGAAGAAGAGGAGGAAAGCGACGATGACGACGACGAGATATTTGTCCCGAGGAAGCCGAGGCGCGGCCGCCGGAGCGAA GCGGCGGCAGTCGAGGACTTTGTGCGCGGTCACCTGAAGAAGACGTTCGCTTCGATTCGGCAGCAGGAGCAGGACCCGGAGGTGCTGGAGAAGATGAATA GCGTCATGAAGGAGAGAGTCGCCGAAGAAGAAACCCTAGATTCTCAATCATCCGACGACGAGGATGATGATAAAGAAGAAGAAGAAGGAGAAGACGAAGC GAGTAAGATGAAGAAGAGAGTGATGGTGGAGGAGGAGGCTTCGCACTGGCCGCTGGATGCCGACATAGGGTGGGGGATTCGTGCGTCGGAGTATTTCGAG CAGCATCCGATCAAGAACGTCGTAGGGGAAGACGGATTCGAGATTGATTGGGAGAAGGAGCTTGACGAAGGTTGGGTGCAGGAGATCAACTGTTTGGAGT GGGAGAGCATCGCCTTTCATCCCAGTCCTTTGATCGTTCTGGTTTTCGAAAGATATAACAGGGCTACTGATAATTGGAAGACATTGAAAGAGCTGGAGAA GGCAGCTCAGGTTTATTGGAATGCCAAGGATCGATTGCCTCCTCGGACGGTGAAGATTGATTTGAACATTGAGAAGGATTTGGCGTATGCACTGAAAGCT AAAGAGTGTCCACAGATTCTGTTTCTAAGAGGGAATAAGATGGTGTACAGAGAGAAAGAATTCCGGACATCCGAGGAATTGGTGCAGATGATTGCACATT TTTACTACGGCGCGAAGAGGCCTGCGTTCATCAATCAAGATACTCGTCGAACTGTTTAG
AA sequence Show only first row Show all	>Lus10024925 pacid=23178860 polypeptide=Lus10024925 locus=Lus10024925.g ID=Lus10024925.BGIv1.0 annot-version=v1.0 MPFLQTIHLPNSLSPLPTSKIHPASLQRLSTVTPALPSLCTPRRWRYCSCSAVRGSSDSEPKAKARSSARRRKPEEEEESDDDDDEIFVPRKPRRGRRSE AAAVEDFVRGHLKKTFASIRQQEQDPEVLEKMNSVMKERVAEEETLDSQSSDDEDDDKEEEEGEDEASKMKKRVMVEEEASHWPLDADIGWGIRASEYFE QHPIKNVVGEDGFEIDWEKELDEGWVQEINCLEWESIAFHPSPLIVLVFERYNRATDNWKTLKELEKAAQVYWNAKDRLPPRTVKIDLNIEKDLAYALKA KECPQILFLRGNKMVYREKEFRTSEELVQMIAHFYYGAKRPAFINQDTRRTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	0	1
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	1.0	0.8953
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10003872 [exp]	3.2	0.8705
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10009586 [exp]	4.9	0.8916
AT4G18593			dual specificity protein phosp...		Lus10013914 [exp]	8.0	0.8302
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	9.2	0.8672
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10004751 [exp]	9.3	0.8733
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10020405 [exp]	11.0	0.8732
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10015741 [exp]	11.0	0.8353
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	11.4	0.8529
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	12.6	0.8493

Compare expression of checked genes

Lus10024925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.