Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28600 684 / 0 NPGR2 no pollen germination related 2 (.1) AT2G43040 493 / 2e-165 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT1G27460 437 / 6e-144 NPGR1 no pollen germination related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022897 [exp] 1265 / 0 AT4G28600 736 / 0.0 no pollen germination related 2 (.1) Lus10008236 [exp] 945 / 0 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10003618 [exp] 929 / 0 AT4G28600 728 / 0.0 no pollen germination related 2 (.1) Lus10011793 [exp] 688 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10023748 [exp] 687 / 0 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10029803 [exp] 480 / 2e-160 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10020725 [exp] 478 / 1e-159 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10017638 [exp] 451 / 2e-149 AT2G43040 929 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10033595 [exp] 449 / 1e-148 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G259300 [exp] 828 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 712 / 0 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.008G169500 [exp] 694 / 0 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.002G055200 [exp] 515 / 6e-174 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G016000 [exp] 480 / 2e-160 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.002G118500 [exp] 468 / 8e-156 AT1G27460 868 / 0.0 no pollen germination related 1 (.1) Potri.019G025600 [exp] 44 / 0.0006 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024926 pacid=23178863 polypeptide=Lus10024926 locus=Lus10024926.g ID=Lus10024926.BGIv1.0 annot-version=v1.0 ATGGTGGGCGAATGGGGTTCTCCTGCTACGCCGAGGTATACCTCAGCAAGCAATCGATCATCCACGAGTAGTAAAACCGAGGAGGAGGGAGTTCAGAAAC CTAATACCAGTAATATCGAAGAGGCCGAATTGTCTCTTCGAGAGCAAAGCTCGTTAAATAATGAGGAAGCTAGAGCATTGTTAGGGAGGATGGAATATCA AAAAGGAAACTTCCAAGCCGCAATACATGTCTTCGAAGGCATAGATGTTTCTGCAGCCACTCCAAAGATTACATCCAGTCTGGCTAGACAAGGATGTCAA CAGAAAAGGACATCTAAGAACTACAGTGGCCACCAGCTGTCTATCCATGCTGTCAGCTTGTTGTTGGAATCAGTCTTTCTAAAGGCAAAATCTTTGCAAC ATCTTGGGAGGTTTGCAGGATTAGACAAAAACTTATGGATGCCTGAATTGCTGATATACATTCTCACACTTATTCTTGCAGAAGCTGCTCAATCTTGCAA AGTAATAGTGGACATAGTTGAATCTTCTTTACCAGAAGGCTTGCCTGAAAACTTTGCTCCTGACTGTAAATTGCAGGAGATTACGAGCAAGGCCATCGAG TTGCTTCCCGAATTATTTAAACAGGCAGATATCTCGCACGAGGCCATATCCTCGTACAGACGGGGTCTCCTCCATCACTGGAACCTCGATATCCAAACTA CCGCAAGGATCCGAAAGGAATTCGCAATCTTCCTTCTGTACAATGGCGGAGAGGTAGCAAGTCCTCCGAATCTACGTTCCCAGATGGACAGCTCGTTCGT TCCTCGAAATAACTTGGAAGAGGCCATACTGCTGTTGATGATACTGTTGAGACAAATCTCACTCAAGAAGATCAAGTGGGATCCATCGATCTTGGATCAT CTTTCGTTCGCTCTCTCGGTCTCTGGTGATCTAATCGCATTAGCCAACTACATCGAAGAATTAACTCCCGGGATAATTAGTAGAAGGGAGATGTATTTTA CTCTTGCTCTATGTTATTACACTGCAGGAGAGGAAACAGTAGCTTTGAATTTACTCAAGAGGTTGTTACATAACAGTGAGGATCCGAATAATGTCAGCGG TTTACTACTGGCATCGAAGATTTGTTGTCGGGGAAACCCTCGACTTGCATTTGAAGGTATCGATTATGCTCGTAGAGCCCTAAAAAATATGGACAATGGA TGTCATGAGTTAGAAAGTGCTGCCGATCTTCTCTTGGGTATTTCGTACTCTTCATGTGCAAGATCGGCTTTGGAAGACTCGGAAAGAGTCTCGAAACAGC GCGAATCGTTAAAGATTCTCGAAGCTGCCGGGAAGAGGACGAATATGGAACATCCTGATATTCTGTACCATCTTAGCCTGGAGAATGCGGAGCAGAGGAA GTTGGATCCCGCGCTTGTTTACGCGAAGAAGGTTGTTAGACGCGAAGCCGGTTCTAGTATCGAGGGGTGGTTGCTATTGGCGAGGATCGTTTCGGCTCAG AAGCGCTTCTTTGATGCCGAGAATGTCATCAATGCAGCGTTGGATCAGACTAGTAAATGGGATCAGGGAGTGCTTTTGCGAACCAAGGCTAAAATTCAGG TCGCGAGGCATGAAATGAAGAGTGCCGTTCAGACTTATACGCAGCTCCTTGCTATTCTTCAAGTTCAGAATCGGAGTTTCGCGTCTCATAAGAAGCTGCA TAAGAATGATGGATTCAATGCTAGACAATTGGAATTGGAAGTTTGGCATGATCTAGCCTCTCTATACATAAGCCTGTCTCGGTGGCGAGATGCCGAGGTT TGCCTCTCGAAATCGAAAGCTATCCAGCCTTTTTCAGCTGATAGATGCCATATCATAGGCACCCTATATGAAAAGAAAGGGCTACTAGAGGAAGCATTGA CGGCTTTCATAACCGGGTTGAGCATTGACACATGCCATGTCGCGAGCTTAGTATCGACGGCAGTTGTTCTCAGGAAGATACGTACTGCATCCAACGAAAC CTTGAGAAGCTTTCTAATGGGTGCTCTACGGCTGGACAGAATGAATGCATCAGCTTGGTATAACCTTGGCTTGGTTCAGAAAGGTGAGGGTTCCGCTTCG TTGTTGACGGAAGCAGCCGAGTGCTTTGAAGCTGCCGCCTTTCTCGAAGAAACGGAGCCAGTCGAGCCTTTCAGATGA
AA sequence Show only first row Show all	>Lus10024926 pacid=23178863 polypeptide=Lus10024926 locus=Lus10024926.g ID=Lus10024926.BGIv1.0 annot-version=v1.0 MVGEWGSPATPRYTSASNRSSTSSKTEEEGVQKPNTSNIEEAELSLREQSSLNNEEARALLGRMEYQKGNFQAAIHVFEGIDVSAATPKITSSLARQGCQ QKRTSKNYSGHQLSIHAVSLLLESVFLKAKSLQHLGRFAGLDKNLWMPELLIYILTLILAEAAQSCKVIVDIVESSLPEGLPENFAPDCKLQEITSKAIE LLPELFKQADISHEAISSYRRGLLHHWNLDIQTTARIRKEFAIFLLYNGGEVASPPNLRSQMDSSFVPRNNLEEAILLLMILLRQISLKKIKWDPSILDH LSFALSVSGDLIALANYIEELTPGIISRREMYFTLALCYYTAGEETVALNLLKRLLHNSEDPNNVSGLLLASKICCRGNPRLAFEGIDYARRALKNMDNG CHELESAADLLLGISYSSCARSALEDSERVSKQRESLKILEAAGKRTNMEHPDILYHLSLENAEQRKLDPALVYAKKVVRREAGSSIEGWLLLARIVSAQ KRFFDAENVINAALDQTSKWDQGVLLRTKAKIQVARHEMKSAVQTYTQLLAILQVQNRSFASHKKLHKNDGFNARQLELEVWHDLASLYISLSRWRDAEV CLSKSKAIQPFSADRCHIIGTLYEKKGLLEEALTAFITGLSIDTCHVASLVSTAVVLRKIRTASNETLRSFLMGALRLDRMNASAWYNLGLVQKGEGSAS LLTEAAECFEAAAFLEETEPVEPFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28600		NPGR2	no pollen germination related ...		Lus10024926 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10030638 [exp]	10.6	0.6736
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040463 [exp]	24.5	0.6569
AT2G24230			Leucine-rich repeat protein ki...		Lus10036608 [exp]	65.7	0.6128
AT3G19260		LOH2, LAG1 HOMO...	LONGEVITY ASSURANCE GENE1 HOMO...		Lus10019859 [exp]	78.8	0.6109
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10017343 [exp]	148.2	0.5596
AT2G24230			Leucine-rich repeat protein ki...		Lus10035826 [exp]	164.1	0.5646

Compare expression of checked genes

Lus10024926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.