Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04010 1019 / 0 ATPSAT1 phospholipid sterol acyl transferase 1 (.1) AT5G13640 79 / 5e-15 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G44830 64 / 2e-10 Lecithin:cholesterol acyltransferase family protein (.1) AT1G27480 50 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003615 [exp] 1183 / 0 AT1G04010 1005 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10008234 [exp] 1171 / 0 AT1G04010 991 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10037657 [exp] 86 / 4e-17 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10015639 [exp] 85 / 9e-17 AT5G13640 1053 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10021564 [exp] 84 / 2e-16 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10017165 [exp] 82 / 5e-16 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10019519 [exp] 74 / 2e-13 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10007728 [exp] 47 / 3e-05 AT1G27480 484 / 3e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10018664 [exp] 46 / 6e-05 AT1G27480 491 / 5e-173 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195500 [exp] 1121 / 0 AT1G04010 1040 / 0.0 phospholipid sterol acyl transferase 1 (.1) Potri.001G171000 [exp] 85 / 6e-17 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.003G063100 [exp] 81 / 2e-15 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.004G190100 [exp] 61 / 3e-09 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10024927 pacid=23178953 polypeptide=Lus10024927 locus=Lus10024927.g ID=Lus10024927.BGIv1.0 annot-version=v1.0 ATGGACGGAAAATCTCTCCGTCGCCTTCTCGTCGTCGCTACCGTTTCCGTTCTACTTCTCACCACCGTAGATGGCGTCGAGTTCGACGGAGACTACTCCA AGTTGTCAGGAATCATCATCCCTGGCTTTGCGTCCACTCAGCTCAGAGCATGGTCCTTGCTCGACTGTCCTTACTCTCCTCTCGATTTCAATCCTCTTGA CTTAGTCTGGCTCGATACGACCAGGCTTCTATCAGCGGTTAATTGTTGGCTCAAGTGCATGTTGCTTGATCCTTACAACCAAACGGATAATGCTGAGTGC AAGTCGAGGCCTGATAGCGGCCTATCTGCGATTACTGAACTTGATCCCGGATATATCACTGGTCCGCTCTCTTCTGTATGGAAAGAATGGATTAAGTGGT GCATCCAATTTGGTATCGAGGCAAATGCAATTATTGCTGTTCCGTACGATTGGAGATTGTCGCCATCGATGCTCGAGGAGCGAGACCTCTACTTTCATAA CCTCAAGTTGACCTTTGAAACTGCTCTCAAACTTCGCGGTGGCCCTTCTTTGGTATTTGGTCATTCATTGGGGAACCTCGTCTTTAGATACTTCCTGGAG TGGCTGAAGCTAGAAATCGCTCCTAAACATTACAATCAATGGCTGGATGACCATATCCATGCTTATTTTGCTGTTGGAGCTCCACTTCTTGGTTCGCCTG AGACTGTGAAAGCTACTCTTTTTGGAAACACATTTGGGCTTCCTGTTTCTGAGGGAACAGCTCGATTGATGTTCAATTCATTTGGTTCTTCGTCTTGGAT GATGCCAATTTCAAAGTATTGTAGATCTGATAATCCATACTGGAAACATTTTTCTGGCGGATTCAGAAGGAATAATCAAACATATCACTGTGAGGAGCAA GAATATCGGTCTGACTACTCTGGATGGCCGACGAACTTGGTCAATATTGAAATCCCTTCTACCCATGGATTTGATGCCTATCCATCACTCTCTGAGATGG TTGAAACTAACTTCTCTAGCTTGGAATGTGGACTCCCTACTCAGCTATCTTTCTCAGCTCGTGAAGTTGCAGATGGAACGCTTTTCAGAGCCATAGAGGA CTATGATTCTGACAGCAAGAGACTATTACACCAGTTACAGAATTCATACCATGGTGATCCTGTTGTGAATCCGCTTACACCATGGGAGAGACCTCCTATT AAAAACATATTCTGCATCTATGGAGTAGATTCAAAGACAGAGGTTGGTTACTATTTTGCACCAAGTGGCAAGCCTTACCCAGATAATTGGATCATGACAG ATGTTATATATGAGATTGAAGGATCCCTCTATACAAGGCAAGTATCATTCTACTGGTCGGGGAATCTGGTTGAAGGGAACCCAGGAGTAACAAGTGGGGA TGAGACAGTACCGTACAATTCCTTATCTCTATGCAAGAGTTGGCTTGGACCAAAAGTGAATATTACAAGAGCGCCCCAGTCTGAGCATGATGGATCTGAT GTACAAGAGGAACTGAATGTGGACCATCGTCCTGATGAAGATATAGTTCCCAACATGACAAAGTCCGCAAGGGTCAAATACATAACGTATTATGAAGATT CTGAAAGCATCCCGGGAAAGAGGACAGCAGTTTGGGAACTTGATAAAGCAAATCATAGGAACATTGTTAGATCTCCTGTTTTGATGCGGGAGTTGTGGCT TCAGATGTGGCACGACATTCGCCCCGACGCAAAATCGAAATTCGTCACAAAAGCTAAGCGAGGACCCCTGAGAGACGATGATTGCTATTGGGACTATGGG AAAGCTCGGTGTGCATGGTCTGAATATTGCGAATATAGATACCTGTTTGGTGATGTTCACTTAGGACAGAGCTGTAGATTGAAGAATTCTTCTGCTGAGA CCCTCTTGAATTACCTATAA
AA sequence Show only first row Show all	>Lus10024927 pacid=23178953 polypeptide=Lus10024927 locus=Lus10024927.g ID=Lus10024927.BGIv1.0 annot-version=v1.0 MDGKSLRRLLVVATVSVLLLTTVDGVEFDGDYSKLSGIIIPGFASTQLRAWSLLDCPYSPLDFNPLDLVWLDTTRLLSAVNCWLKCMLLDPYNQTDNAEC KSRPDSGLSAITELDPGYITGPLSSVWKEWIKWCIQFGIEANAIIAVPYDWRLSPSMLEERDLYFHNLKLTFETALKLRGGPSLVFGHSLGNLVFRYFLE WLKLEIAPKHYNQWLDDHIHAYFAVGAPLLGSPETVKATLFGNTFGLPVSEGTARLMFNSFGSSSWMMPISKYCRSDNPYWKHFSGGFRRNNQTYHCEEQ EYRSDYSGWPTNLVNIEIPSTHGFDAYPSLSEMVETNFSSLECGLPTQLSFSAREVADGTLFRAIEDYDSDSKRLLHQLQNSYHGDPVVNPLTPWERPPI KNIFCIYGVDSKTEVGYYFAPSGKPYPDNWIMTDVIYEIEGSLYTRQVSFYWSGNLVEGNPGVTSGDETVPYNSLSLCKSWLGPKVNITRAPQSEHDGSD VQEELNVDHRPDEDIVPNMTKSARVKYITYYEDSESIPGKRTAVWELDKANHRNIVRSPVLMRELWLQMWHDIRPDAKSKFVTKAKRGPLRDDDCYWDYG KARCAWSEYCEYRYLFGDVHLGQSCRLKNSSAETLLNYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10024927 [exp]	0	1
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10033903 [exp]	4.2	0.8513
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	7.5	0.8528
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	8.5	0.8521
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	11.1	0.8457
AT1G72660			P-loop containing nucleoside t...		Lus10015662 [exp]	11.5	0.7740
AT1G33970			P-loop containing nucleoside t...		Lus10009483 [exp]	15.2	0.7121
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10018895 [exp]	17.1	0.8440
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	18.8	0.8449
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	24.2	0.8378
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	26.6	0.8285

Compare expression of checked genes

Lus10024927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.