Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49830 54 / 5e-09 EXO84B exocyst complex component 84B (.1.2.3) AT1G10180 45 / 7e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022896 [exp] 154 / 2e-44 AT1G10180 225 / 2e-62 unknown protein Lus10033387 [exp] 55 / 3e-09 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3) Lus10034843 [exp] 55 / 3e-09 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10035756 [exp] 52 / 2e-08 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10033648 [exp] 52 / 2e-08 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10017692 [exp] 52 / 3e-08 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10037332 [exp] 50 / 1e-07 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10018297 [exp] 45 / 4e-06 AT1G10180 858 / 0.0 unknown protein Lus10040609 [exp] 45 / 4e-06 AT1G10180 854 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195400 [exp] 101 / 8e-26 AT1G10180 215 / 8e-59 unknown protein Potri.008G009100 [exp] 52 / 1e-08 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.010G249900 [exp] 52 / 2e-08 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.016G063700 [exp] 48 / 5e-07 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.012G120000 [exp] 45 / 6e-06 AT1G10180 809 / 0.0 unknown protein Potri.015G118500 [exp] 43 / 2e-05 AT1G10180 788 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF08700 [flax] [poplar] Vps51 Vps51/Vps67
Representative CDS sequence Show only first row Show all	>Lus10024928 pacid=23178964 polypeptide=Lus10024928 locus=Lus10024928.g ID=Lus10024928.BGIv1.0 annot-version=v1.0 ATGGAATCCTCCTCCGCCACCTCCCTCGCCTCCAGGTTCCGGTTCAGGGACCATGCGCAGCAGTCGGAGAACGCCTCCGAATCTGATACCGACACCGATA TTTCTTCTGATTCCGTTGTTAAGGATGACGAGGAGACGGAGCTCGACTCCATGACTGCCAAGGGAATCAAGCGGCTCTGTATGGAATTGCTGGAGATAAA GGCAGCATCTGATGAAGATTTTCATAAGAATGTTTTCTCCAATTATTCTTCCTTCGTTGGAATTTTTGAAGATGTGAAGGACATTGAAAAAGAGTTGTCG CAACTGAAAAATCAAGTTTGGATGCAGAAGAATCTTGCTAACAACCTTATGAAGCCATCTCATGTCTTGAGAAGGAGGAAGAGAATTTGCACAAGTTGCA AATTGGTGGTGAAATATCAGCAGATTTATTAA
AA sequence Show only first row Show all	>Lus10024928 pacid=23178964 polypeptide=Lus10024928 locus=Lus10024928.g ID=Lus10024928.BGIv1.0 annot-version=v1.0 MESSSATSLASRFRFRDHAQQSENASESDTDTDISSDSVVKDDEETELDSMTAKGIKRLCMELLEIKAASDEDFHKNVFSNYSSFVGIFEDVKDIEKELS QLKNQVWMQKNLANNLMKPSHVLRRRKRICTSCKLVVKYQQIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10024928 [exp]	0	1
AT5G43530			Helicase protein with RING/U-b...		Lus10041156 [exp]	10.0	0.8830
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10022898 [exp]	10.7	0.8691
AT4G16807			unknown protein		Lus10010995 [exp]	12.6	0.8500
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10040162 [exp]	13.0	0.7491
AT5G22820			ARM repeat superfamily protein...		Lus10005366 [exp]	17.9	0.8438
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10031960 [exp]	21.9	0.8366
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10034370 [exp]	26.2	0.8395
AT1G79890			RAD3-like DNA-binding helicase...		Lus10037548 [exp]	26.5	0.8488
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10036769 [exp]	31.0	0.8495
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10026079 [exp]	38.8	0.8304

Compare expression of checked genes

Lus10024928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.