Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1) AT5G49830 164 / 2e-42 EXO84B exocyst complex component 84B (.1.2.3) AT1G10180 157 / 3e-40 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022896 [exp] 1226 / 0 AT1G10180 225 / 2e-62 unknown protein Lus10040609 [exp] 173 / 2e-45 AT1G10180 854 / 0.0 unknown protein Lus10035756 [exp] 172 / 4e-45 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10018297 [exp] 170 / 3e-44 AT1G10180 858 / 0.0 unknown protein Lus10034843 [exp] 169 / 4e-44 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10037332 [exp] 165 / 9e-43 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10017692 [exp] 147 / 1e-36 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033648 [exp] 132 / 9e-32 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033387 [exp] 125 / 7e-30 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195400 [exp] 602 / 0 AT1G10180 215 / 8e-59 unknown protein Potri.012G120000 [exp] 191 / 1e-51 AT1G10180 809 / 0.0 unknown protein Potri.008G009100 [exp] 187 / 2e-50 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.010G249900 [exp] 184 / 5e-49 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.015G118500 [exp] 179 / 3e-47 AT1G10180 788 / 0.0 unknown protein Potri.015G119300 [exp] 168 / 1e-44 AT1G10180 628 / 0.0 unknown protein Potri.016G063700 [exp] 169 / 5e-44 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024929 pacid=23178870 polypeptide=Lus10024929 locus=Lus10024929.g ID=Lus10024929.BGIv1.0 annot-version=v1.0 ATGCTTAAATTGCAATTGACTCTGCTGGCTGAAAATTCAAGAATAGCTGCTCCAGAACTCCAGAAGGCTCTCTCTGGGCTCTGCAAGCTGGGTGACAGCG GCCTGGCAACTCAGTTATTGCTCAAACATTACCATACTCGCATTGTGGCCGGAATAGATCAATTGGAGAATTCAGAGTCATTTTTACTTGATATGTACAG TAGAGACCTTTCCAAACTTGTTTTCTCCATGATATCCCAAGCGGCTAAGAGCTTCGTCATGCTGCATGGGGAGTCTGTAACCTATGCTACTGAACTGGTT CAGTGGGCTCGCGACGAAGTTCAAACTTTTGTTGGTTCGTTTAGTAAATATGCAAAATCGATCTCAGATGTCAGTTATGGACTGTCGTCAGCTGTAGAAG CTGTCCAATTCGCTCTGTCATATTGCTCACTCTTAGAGGCTCAGGGATTGACATTGCAGCCTTACTTGGTCAAGCTTATTCGACCCTGTGCAGAAGAAGT TCTAGAGGTGCACATAGACCATTTCAAGAAAGTGATTGGCATCTTTACAGTAACAGATTCTTGGGTTTTAAGTAGATATCTCATATCTGGAGTCATGACT GAAAGCTACTATTCTGCTGTATTTGGGCAAGAATCAGAATACTGTTTACTCACAAATAGTGGGCGGAAGTTTGTAACTCTCTTGCAGGCAATGACCAGAG ATGTTATTCCTTTGGTAGCCCTCCGAATGCAAGGTTCCATCCTTAGAGGGTTGATGAACCTTTTCATGGAGTACATGTCTATCCTTGAAACAGCTATGAC CAACGATATAGACAGCCAGGAGAAAGGTGATTCAGAAATTATATGGGCTGATTCAGTACCACAACAAGTTTCAATCCTGGCAAATCTGTCCACACTTGAA CATTTCTACTCTAGCACCATGTCAAGTATTTTTGGAGACATCAATCGTATCAATTCTGAGTCAATGAGCAACCAGCCTATTGGGTTTCAACAGCAGCAGA TTGAAGATTGCGTACTGTTCATCCAAGAGGCATCTAGTAGACTGAGGTCTTGTTTCTGTGAGCAATATGTATACAAGCTAATGTCGCTTGAAACTGAGTG TAAATCGACCCTCAAAAAATATATTGCTAGCAAGGATGAATGTGGCTGGAGTCATGATATGATGCCCTCTCTTGCCTTTCAGGGTCTGTTTCTAGAGTTC CGAAAATTAGAAAAGCTGGCTGAACACCAAATCTTTGAATCCAGTTGGTTGGTGGAGTTAATATGTGAGCTCATTGATGCTGTATTCGTCTGGATTTCAA AGAACAAAGAGTTTTGGGAATTGAATCAACATGAGTCAACTCTTCCAAGTTCTCAAGATTCAAAGCAGTTTGTGCTTGATATGTATTTCCTGATGCAAAT CACAAGACATGGGGGATACTTATCCGAGAATCCTTCAGCACCTGTTGCTCTGTTAGAATCAGCTTTCGTCTCCGTTGGGCTTGATCCTGACAGAGAAGCA GCTGGTGATGAATGGGCCATCAATGCAGCAACCGAATCAATCAAATGGCTGGTGGAAATTGAGCAAGACTCCATGCCCTCCAATCAGGAAAATGATGTGA CAACCGCGGAAAGCCATCCCGAGCTAGCTAGTGGATCAACCCAAGACGATGAGTCAAGTTCCTCAGATGATTCCGCTCAAGTGGTCGCCACAGAAGGTTC GAGACAGCTTCCATTACCGGCCTCGGACCATTGGGCGCATTCAGAGCAGAGTTCACAAGATGCAGGAGAAGAAGTGGGCTACCGCATTGAAGAAGCAGCG TACGAGAAGTTTGAGCTGACCGAAGAAGAAGAAGCATCAAGCTTTGAGCATGTAACAATGTTGTCCGCAGGTGCGACCACTGCTGATTCCCCCGAGATGA CTATGTTTCGGAACGAAGGACGGGGGCTGAGTCGACGTACTAGGGGCGGTAAAGGTCTCGGCAATGAGCTGGAGGGTGATGGTGTTGAAGCAGAGTCGCT GTGA
AA sequence Show only first row Show all	>Lus10024929 pacid=23178870 polypeptide=Lus10024929 locus=Lus10024929.g ID=Lus10024929.BGIv1.0 annot-version=v1.0 MLKLQLTLLAENSRIAAPELQKALSGLCKLGDSGLATQLLLKHYHTRIVAGIDQLENSESFLLDMYSRDLSKLVFSMISQAAKSFVMLHGESVTYATELV QWARDEVQTFVGSFSKYAKSISDVSYGLSSAVEAVQFALSYCSLLEAQGLTLQPYLVKLIRPCAEEVLEVHIDHFKKVIGIFTVTDSWVLSRYLISGVMT ESYYSAVFGQESEYCLLTNSGRKFVTLLQAMTRDVIPLVALRMQGSILRGLMNLFMEYMSILETAMTNDIDSQEKGDSEIIWADSVPQQVSILANLSTLE HFYSSTMSSIFGDINRINSESMSNQPIGFQQQQIEDCVLFIQEASSRLRSCFCEQYVYKLMSLETECKSTLKKYIASKDECGWSHDMMPSLAFQGLFLEF RKLEKLAEHQIFESSWLVELICELIDAVFVWISKNKEFWELNQHESTLPSSQDSKQFVLDMYFLMQITRHGGYLSENPSAPVALLESAFVSVGLDPDREA AGDEWAINAATESIKWLVEIEQDSMPSNQENDVTTAESHPELASGSTQDDESSSSDDSAQVVATEGSRQLPLPASDHWAHSEQSSQDAGEEVGYRIEEAA YEKFELTEEEEASSFEHVTMLSAGATTADSPEMTMFRNEGRGLSRRTRGGKGLGNELEGDGVEAESL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10385			Vps51/Vps67 family (components...		Lus10024929 [exp]	0	1
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	7.6	0.8780
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	19.7	0.8662
AT5G55820		WYR	WYRD, unknown protein		Lus10022519 [exp]	20.5	0.8763
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10041214 [exp]	22.4	0.8454
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	25.2	0.8698
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10020576 [exp]	25.6	0.8671
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	31.7	0.8509
AT5G37010			unknown protein		Lus10020782 [exp]	32.5	0.8578
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	32.6	0.8597
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	36.4	0.8632

Compare expression of checked genes

Lus10024929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.