Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04020 201 / 2e-56 ROW1, ATBARD1, BARD1 breast cancer associated RING 1 (.1.2) AT4G21070 133 / 1e-32 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT3G15120 47 / 4e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022895 [exp] 865 / 0 AT1G04020 421 / 2e-137 breast cancer associated RING 1 (.1.2) Lus10036151 [exp] 191 / 2e-52 AT4G21070 381 / 6e-118 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Lus10017935 [exp] 58 / 2e-08 AT3G15120 1385 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013677 [exp] 57 / 5e-08 AT3G15120 1474 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001455 [exp] 44 / 0.0004 AT4G02110 372 / 1e-108 transcription coactivators (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G259000 [exp] 397 / 8e-130 AT1G04020 472 / 3e-156 breast cancer associated RING 1 (.1.2) Potri.001G358100 [exp] 159 / 5e-41 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.011G141400 [exp] 55 / 1e-07 AT3G15120 1478 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain
Representative CDS sequence Show only first row Show all	>Lus10024930 pacid=23178835 polypeptide=Lus10024930 locus=Lus10024930.g ID=Lus10024930.BGIv1.0 annot-version=v1.0 ATGGCGTCCGAGAGTGTTAGGTCGATGAATCCAGGGTTCCTCCATCTTCAGAAGCTCGGCCTCGAGCTCAAATGTCCCCTCTGGTCGTGTCTCCCTGGAT CGACGCAGTTAGCTCTCCAGTGCCCTTTTTGCGAGTCTCCGTACACTGATAAAGATGATCTAAGATCTCAATGGAAGTTCTTGATGGTTGCAGATATTAG GAGTGTGCCTTTGATAGAGAACATTGTGAGTATCTATAAAGGATTGGATGCTGCCTTTTCAAAGACTGCGAGGCATTCTGCATCTGTTGCTTCTGGTCAA AATTCCCCAAGTTTGCGTAGTAAAGATGAATCTGTCAAAGCCAGCAGCTTCAGTGCAAGGCGTTGCTCATTTGCGACTGCTGATGAGAAGTTACCTTCAA CTGGGAAAGTGGCTGACAACAAATATAGTTTGCCTAGGTGCTTGAATTATGATAACCAAGAAAATGTGGTGTATGTTGAAAATCAACGCTGCAATGGCAA ATCGAATGGGGAATCTCCACCGGTGAATTTGCAGGCAGGAGTGCAGTCTTTGGAGGAGGGGTATGGAGGAGGCTTCAATCAGGTAGACCAGTTGTCGCTT GATAGTCCATCATTTGGTGATGTCAAGGATTCTGAGAATGACAGTAACGATGATCATTGTGGCGATGATACGCCCCAAAATCGTGCTGTGGCAAAGGTGA TTCGAAAGTCTGTTGACGGGAAGGGAATGCAAGAGCATGGCAATTCGGATTCTGGTACTCCTGAAGAGCACCTGAGGAATTCCAAGAGGCAAAAATTGAA CTATAACTCAGTAGAATCAACGATAACCAATCATGAGCATTTTGAGCCAATGATATCTCAAACTGAAAATCTCAGAGTTGCCGGTATTCACAAATCTCCA CAGGGTGATCAGCTGTCCACCACTGATAATGTTTGTGGGTTTTGTCACTCCTCTAAGGTCTCAGAGGATACTGGACCAATGATGCATTATGTAAAGGGGA AGATGGTTGAGCAGCATGAAGCCAATGTGTCCGGTGCGGTGCATGTTCACAGAATATGTATTAACTGGGCACCTGAGGTGTATTACAAGGGTGATGTTGT CATGAATTTGAAGCAAGAGCTGGGTAGGGGTGCAAAACTGAAGTGTAGTGGATGCAGAAAAAAAGGTGCAGCACTGGGCTGTTATGTCGATTCTTGCCGG AAAAATTCATCAAAGCGTTCAAAAGAGTGGCTGTTCTGTGGATCTGCTCTCTCTATTGAGGAGAAGACTATTCTAGTGGAATTCGGGAACTCGATTGGTG TACCAGTAACGAAATTCTGGAGACCAGATGTCACACATGTGATTGCATCCATAAATACAGAAGGGGCTTGCACTAGGACGCTGAAAGTTCTCATGGCAAT CCTCAATGGCAAATGGGTCCTAACAATTGACTGGATCAAAGCATGTATCGATTCAAAGTCTCCGGTCGATGAAGAACCATACGAAGTGAGACGAGACAAT CATGGATCAACTGATGGCCCCAGATCTGGCAGACTTCGTGCCCTGGACAATGAGGCGCAGTCTGGGGAAGTAAGGAAGAAATGCTGGAGAAGAACGGCGG CGATGCAGCTTCCCCAATGA
AA sequence Show only first row Show all	>Lus10024930 pacid=23178835 polypeptide=Lus10024930 locus=Lus10024930.g ID=Lus10024930.BGIv1.0 annot-version=v1.0 MASESVRSMNPGFLHLQKLGLELKCPLWSCLPGSTQLALQCPFCESPYTDKDDLRSQWKFLMVADIRSVPLIENIVSIYKGLDAAFSKTARHSASVASGQ NSPSLRSKDESVKASSFSARRCSFATADEKLPSTGKVADNKYSLPRCLNYDNQENVVYVENQRCNGKSNGESPPVNLQAGVQSLEEGYGGGFNQVDQLSL DSPSFGDVKDSENDSNDDHCGDDTPQNRAVAKVIRKSVDGKGMQEHGNSDSGTPEEHLRNSKRQKLNYNSVESTITNHEHFEPMISQTENLRVAGIHKSP QGDQLSTTDNVCGFCHSSKVSEDTGPMMHYVKGKMVEQHEANVSGAVHVHRICINWAPEVYYKGDVVMNLKQELGRGAKLKCSGCRKKGAALGCYVDSCR KNSSKRSKEWLFCGSALSIEEKTILVEFGNSIGVPVTKFWRPDVTHVIASINTEGACTRTLKVLMAILNGKWVLTIDWIKACIDSKSPVDEEPYEVRRDN HGSTDGPRSGRLRALDNEAQSGEVRKKCWRRTAAMQLPQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Lus10024930 [exp]	0	1
AT4G31400		CTF7	damaged DNA binding;DNA-direct...		Lus10021277 [exp]	12.6	0.8066
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10011627 [exp]	28.3	0.7758
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10018436 [exp]	49.1	0.7703
AT4G35880			Eukaryotic aspartyl protease f...		Lus10028410 [exp]	66.0	0.7655
AT5G13520			peptidase M1 family protein (....		Lus10040361 [exp]	68.6	0.7353
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10029421 [exp]	77.2	0.7594
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10040404 [exp]	80.3	0.7542
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	88.2	0.7530
AT5G13520			peptidase M1 family protein (....		Lus10040362 [exp]	94.1	0.7176
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10029613 [exp]	126.3	0.6827

Compare expression of checked genes

Lus10024930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.