Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022893 [exp] 367 / 1e-130 ND / Lus10024931 [exp] 196 / 1e-62 ND / Lus10022894 [exp] 183 / 1e-57 ND / Lus10005395 [exp] 179 / 3e-56 ND / Lus10005397 [exp] 177 / 1e-55 ND / Lus10024084 [exp] 172 / 2e-53 ND / Lus10041636 [exp] 168 / 4e-52 ND / Lus10008233 [exp] 153 / 3e-44 ND / Lus10005398 [exp] 125 / 1e-35 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024932 pacid=23178906 polypeptide=Lus10024932 locus=Lus10024932.g ID=Lus10024932.BGIv1.0 annot-version=v1.0 ATGTCGACTACGACGGAGATCAAACGATTGCCTAGGTACGTGACACTCCGATCCACATCCGTCAACAAGTACATGCACTACCTATGGAACGAAGAGGAGT TCGGTGCCCAGTACCAAGCCATGGGGTGCAAGCGGGACATAGACCCCGTGAGCCCCTTTGTGAAAATCGAGGTCGTCCCCTCTGCAAACGACCCAGAACG TCACGTGCACCTCCGGTGCTCTTACAACAACAAGTACCTCAAGCTGATGAAAAAGCACGGCGTGATGTGGGTCGCCGCCACGGGAGAAGAGCCCGTCGAA GGGAAAGTGGTCCCGCCGCTGCAACCACCTAACCATGCTGATCCGAACGGCGGTGGGCCCAGGCGCGGCGGCCCCCCCCCCACCCTGTTCGACCCTGTTT TCCCTCCCGACGAACCCGACAGTGTCGGGTTCATGCACGTTGAGACGGGCCTCCACATGCGTACATTCTCCAACCAGACGTTCAGTGCCGAGGTGAACGA CGTTGTGTGCGTGTACACCCACGACGACGTGGGGACCATGCACCGGTTCGAGTATAGGCCGTGGGTGTCGTACCAAGAAGTGGTGACGGCCCACAAGGCG GAGCTGAAGAGGCTGAGGGCCCATACGGAGTCGGCCTTGAGGAGAAGGCCCAAGCGGAAGATGGGGAGATCCAGCAGCTGA
AA sequence Show only first row Show all	>Lus10024932 pacid=23178906 polypeptide=Lus10024932 locus=Lus10024932.g ID=Lus10024932.BGIv1.0 annot-version=v1.0 MSTTTEIKRLPRYVTLRSTSVNKYMHYLWNEEEFGAQYQAMGCKRDIDPVSPFVKIEVVPSANDPERHVHLRCSYNNKYLKLMKKHGVMWVAATGEEPVE GKVVPPLQPPNHADPNGGGPRRGGPPPTLFDPVFPPDEPDSVGFMHVETGLHMRTFSNQTFSAEVNDVVCVYTHDDVGTMHRFEYRPWVSYQEVVTAHKA ELKRLRAHTESALRRRPKRKMGRSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024932 [exp]	0	1
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10034208 [exp]	2.0	0.8965
AT1G14550			Peroxidase superfamily protein...		Lus10009899 [exp]	4.9	0.8813
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10024306 [exp]	5.7	0.9176
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10031622 [exp]	6.8	0.9259
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008918 [exp]	13.4	0.9053
AT5G67020			unknown protein		Lus10019249 [exp]	17.0	0.8688
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	21.8	0.8926
AT2G34930			disease resistance family prot...		Lus10016344 [exp]	22.4	0.7952
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007500 [exp]	23.7	0.8418
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10001555 [exp]	23.7	0.8764

Compare expression of checked genes

Lus10024932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.