Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46050 449 / 2e-154 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 407 / 6e-138 Major facilitator superfamily protein (.1) AT2G40460 348 / 5e-115 Major facilitator superfamily protein (.1) AT5G01180 307 / 4e-99 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G54140 302 / 3e-97 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G62200 296 / 1e-94 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02040 286 / 5e-91 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G68570 277 / 2e-87 Major facilitator superfamily protein (.1) AT3G53960 274 / 5e-86 Major facilitator superfamily protein (.1) AT3G54450 272 / 8e-86 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022892 [exp] 747 / 0 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 704 / 0 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024935 [exp] 626 / 0 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10003614 [exp] 528 / 0 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10008232 [exp] 524 / 1e-176 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011786 [exp] 494 / 1e-171 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 493 / 2e-171 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10034206 [exp] 319 / 2e-103 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 308 / 3e-99 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258900 [exp] 540 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 516 / 1e-180 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 509 / 5e-178 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 502 / 5e-175 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258832 [exp] 364 / 4e-125 AT5G46050 314 / 1e-103 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.019G055800 [exp] 362 / 3e-120 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.009G042400 [exp] 317 / 7e-103 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 309 / 5e-100 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 304 / 7e-98 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.008G061100 [exp] 302 / 7e-97 AT3G53960 697 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10024933 pacid=23178965 polypeptide=Lus10024933 locus=Lus10024933.g ID=Lus10024933.BGIv1.0 annot-version=v1.0 ATGGCGGCAGGCCAGTTTGATGACTTTGAGCCCAAGGAAAGAGCTCACAAGCTCTCCTTCTTCAACTGGTGGATGTTCTGCTTCTTCGTTGGCACACTTT TCTCCAACACTTTCCTCATCTACCTCCAGGACAATGTTAGTTGGGCACTTGGTTATGGACTCCCCACCGCAGGGCTTGTGATTTCCGTTGCTCTCTTCTT GACCTGGACTCCCGTGTATAGACACAAACTCCCTCAAGGAAGTCCTTTTACTAAAATGGTTCTAGTCCTTGTTGCTGCTGCCGGGAAATGGAACGTTAAG CTGCCTGATGATCCCAAGGAGCTCTATGAACTTGGTGTTGATCAATATAAGAAGTTGGGGAAGTTCACTGTCGATCACACCCCTTCTTTGAGGTTTCTAG ACAAAGCAGCAGCACGAACAAAGACAACATCACCATGGCACCTAACACCAGTAACCCAAGTGGAAGAGACAAAGCAAATGCTAAAGATGCTCCCAATCCT AGCAATCACAATAATCCCAAGCGCCATAGTAGCCCAATCAACAACTCTGTTCATCAAACAAGGAGCAACAATGGACAGAAGCATGGGACCTCATTTCGAA ATCCCAGCAGCCTGCCTAGCGGCACTCATCACAATCTCAATGCTAATCAGCATAGTAATCTACGACCGCTGGTTCGTGCATTTCGTCAAACAATTTACAG GCAATCCACGAGGGATTACATTACTCCAAAGAATGGGGATCGGACTTATCCTCCAGATCATGGTCATCGTCTCCGCCTGCCTTGCTGAGCGAAAGAGGCT TGAAACCGCAAACAACCACAACAAACTACAGAAACTGGACCAGGTACCACTCACCATCTTCATATTGATGCCTCAGTTTGCTCTGCTGGGAGTGGCGGAT TGCTTCCTGGAAGTTGCGAAGCTGGAATTCTTCTATGATCAGGCTCCAGAAGGGATGAAATCTTTGGGGACCTCTTACTTCACTAGCAGCATTGGATTGG GGCAGTTCCTGAGTAGCTTCTTGGTGAGGCTTGTGGCGAATTTGAGTGCGAGGAATGGCAAAGGTTGGATATTGAACAATTTGAATGTATCGCATTTGGA TTACTATTATGCGTTGCTGGCGGGTTTGGCTTTGGTGAACTTGATTGGGTTCTTTGTAGTGGCTAAGTTCTTTGTGTATAACGTTGTTGAGTTGGAGAGT CGAAGGAACCGCCTCGTAAAGGAGCATCAAGATGTTGACAATCGCGGAGGCGATGGTGATGTAAATCACAAGCAATGA
AA sequence Show only first row Show all	>Lus10024933 pacid=23178965 polypeptide=Lus10024933 locus=Lus10024933.g ID=Lus10024933.BGIv1.0 annot-version=v1.0 MAAGQFDDFEPKERAHKLSFFNWWMFCFFVGTLFSNTFLIYLQDNVSWALGYGLPTAGLVISVALFLTWTPVYRHKLPQGSPFTKMVLVLVAAAGKWNVK LPDDPKELYELGVDQYKKLGKFTVDHTPSLRFLDKAAARTKTTSPWHLTPVTQVEETKQMLKMLPILAITIIPSAIVAQSTTLFIKQGATMDRSMGPHFE IPAACLAALITISMLISIVIYDRWFVHFVKQFTGNPRGITLLQRMGIGLILQIMVIVSACLAERKRLETANNHNKLQKLDQVPLTIFILMPQFALLGVAD CFLEVAKLEFFYDQAPEGMKSLGTSYFTSSIGLGQFLSSFLVRLVANLSARNGKGWILNNLNVSHLDYYYALLAGLALVNLIGFFVVAKFFVYNVVELES RRNRLVKEHQDVDNRGGDGDVNHKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024933 [exp]	0	1
AT3G29760			Haloacid dehalogenase-like hyd...		Lus10027135 [exp]	4.7	0.8978
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10043366 [exp]	6.6	0.8496
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10013799 [exp]	11.4	0.8710
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008669 [exp]	12.4	0.8735
					Lus10000964 [exp]	13.9	0.7253
AT3G58880			F-box/RNI-like superfamily pro...		Lus10020329 [exp]	18.2	0.8609
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10021873 [exp]	18.2	0.7386
AT1G69550			disease resistance protein (TI...		Lus10005376 [exp]	20.3	0.8394
AT5G22580			Stress responsive A/B Barrel D...		Lus10009407 [exp]	20.4	0.8557
					Lus10002859 [exp]	20.9	0.8612

Compare expression of checked genes

Lus10024933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.