Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020249 [exp] 454 / 5e-157 ND / Lus10025503 [exp] 405 / 9e-138 ND / Lus10031082 [exp] 253 / 2e-78 ND / Lus10026716 [exp] 207 / 4e-63 ND / Lus10002735 [exp] 130 / 2e-32 ND / Lus10016109 [exp] 110 / 8e-26 ND / Lus10020808 [exp] 86 / 1e-17 ND / Lus10035468 [exp] 77 / 1e-16 ND / Lus10029184 [exp] 76 / 2e-14 AT1G24020 84 / 1e-18 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10024934 pacid=23179005 polypeptide=Lus10024934 locus=Lus10024934.g ID=Lus10024934.BGIv1.0 annot-version=v1.0 ATGAGCCAGAGATTGCCGAGGTTCGTGGTCTTCTACTCCAAGAGTGCTGCGAAATACCTGACCTACCAATCAGGTCAGGAACTCGGTATGCAATCCGGCA AGGTCTCAAGCCCACTTTCCAAGTTCGAGGTGGTTCCATCGATGGTGGACTCATCCAAGGTTCACCTCAGGAGTTGTTACAACAACAAGTACCTTCGACA AAAGAATTCCAAGGAGATATTGATTATTGCGGCTGCGGACAAGGCGGAGGAACAAAACCAAACGTTGTGGTCCTCCACCTTGTTCCAGCCCGAATTCGTG GCCGATGGATCGGTAAGATTGCTTCACGTCTATTCCAAACAATATCTTGAATGGTATAGTTACGGTCATGGACACCAGGATTCCTTGATATTGGTAGACT CCAAGTATCCTAATCCGAACAATAATGTGTTCCAACCCATCGACTGGGAATCACTGGTGACACTGCCAAGACGCCTGTCATTTAAAGGTGACAATTGGTG GTACCTTGGTCTAAGTGGTACCGGAACTCTTCTGCAATTCGAGACCCAAGATCAAGGACACAAATCTGTCGTTAATGAGATAGTCTACTTACCGGATGGA ACGTTCCGCATCAAGAATGTCTCCCTCGGAGCGTTCTGGAAGATCAATGCTCAGACCGGGTTCATATCGGCCGATGACAAATCCACTACTCCTACTCCCG AATCCCTGTTTTCAGCTGTTAAGGCGAATGAAAGTTCAATTGCTCTCCGGAGCCTTGGGAACAACAAGTTGTGCAAGAGATTCACTATACTGAAAAATGT AATCAATGGTTTGAATGCAATGGAATCCGAAATCACGCAATACGCCCGCTTGATGCTGACCGAGCTGGTGGCTTCGAGGAGCATAACGAACATCGACTTC CACGCCAACGACGGTTGGGTTTACAGCGAAACCACGAACGTGGTACTAAACCCTGGTCAGGATGTGATCAACCACACTACAAAACCTCAAACCCTAGAGG TGAACATCCCTTACTATGATGTCAAGACTAGCAAATATTGCACTGGCACGGCCCAAACCCTCAAGCAGCTGGGGCCGGTCTTCGAGATCCATCCCAAAGA GACCGCCCATGTCAGTGATTCGAGGATGATCGAGATCATCCCTTCGTCGTTGGAACCACCATCCTATGTTTCGGGAGAAACAAAGTCGAAAGAATCCTGG ACCTTTAAATCTCACCAAATCGTCCTGAAACCGATGACAAAGGTGACACTCAAACTGTTTGCGAATTCGATTGCATGTGACGTTCCTTTCACTTATACTC AACATGATGTTCTCGACGAGGCTACGAAACAAGTGGAGATTCGTGTCATGGACGATGGTGTCTATACCGGCACTAATTACATCAACGTCACGGTTGATGC CTCTCCGCCGGAGCCTATATTTCATTAG
AA sequence Show only first row Show all	>Lus10024934 pacid=23179005 polypeptide=Lus10024934 locus=Lus10024934.g ID=Lus10024934.BGIv1.0 annot-version=v1.0 MSQRLPRFVVFYSKSAAKYLTYQSGQELGMQSGKVSSPLSKFEVVPSMVDSSKVHLRSCYNNKYLRQKNSKEILIIAAADKAEEQNQTLWSSTLFQPEFV ADGSVRLLHVYSKQYLEWYSYGHGHQDSLILVDSKYPNPNNNVFQPIDWESLVTLPRRLSFKGDNWWYLGLSGTGTLLQFETQDQGHKSVVNEIVYLPDG TFRIKNVSLGAFWKINAQTGFISADDKSTTPTPESLFSAVKANESSIALRSLGNNKLCKRFTILKNVINGLNAMESEITQYARLMLTELVASRSITNIDF HANDGWVYSETTNVVLNPGQDVINHTTKPQTLEVNIPYYDVKTSKYCTGTAQTLKQLGPVFEIHPKETAHVSDSRMIEIIPSSLEPPSYVSGETKSKESW TFKSHQIVLKPMTKVTLKLFANSIACDVPFTYTQHDVLDEATKQVEIRVMDDGVYTGTNYINVTVDASPPEPIFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024934 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021387 [exp]	1.0	0.8294
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10014724 [exp]	4.6	0.7755
					Lus10014650 [exp]	5.8	0.7910
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Lus10040619 [exp]	6.5	0.6616
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	6.9	0.7828
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	8.0	0.7828
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10038182 [exp]	8.5	0.6533
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	8.9	0.7828
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	9.8	0.7828
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10005476 [exp]	11.3	0.7668

Compare expression of checked genes

Lus10024934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.