Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46050 636 / 0 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 599 / 0 Major facilitator superfamily protein (.1) AT2G40460 511 / 2e-176 Major facilitator superfamily protein (.1) AT3G54140 463 / 4e-158 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 439 / 1e-148 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 431 / 3e-145 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 412 / 1e-137 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 387 / 2e-128 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G53960 382 / 7e-126 Major facilitator superfamily protein (.1) AT2G37900 369 / 2e-121 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022891 [exp] 1026 / 0 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 929 / 0 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10008232 [exp] 732 / 0 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10003614 [exp] 728 / 0 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011786 [exp] 696 / 0 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 690 / 0 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024933 [exp] 616 / 0 AT5G46050 467 / 2e-161 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10034206 [exp] 467 / 7e-159 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 459 / 4e-156 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258900 [exp] 761 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 734 / 0 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 695 / 0 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 689 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.019G055800 [exp] 504 / 2e-173 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.009G042400 [exp] 457 / 1e-155 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 452 / 1e-153 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 451 / 5e-153 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 443 / 3e-150 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 439 / 1e-148 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10024935 pacid=23178905 polypeptide=Lus10024935 locus=Lus10024935.g ID=Lus10024935.BGIv1.0 annot-version=v1.0 ATGAAGAATCTTGCTTCGCAAGAAAAGGGTGATGATGCCTACACTGAGGACGGGACTGTCAGCCTCCGTGGCAGTCCCGTCCTGAGATCGAAAACCGGGA GATGGAGAGCTTGCTCCTTCATTGTTGGGTATGAAGTGTTTGAAAGAATGGCTTACTATGGCATAGCAACAAACCTAGTGGTGTACTTGGGAGAAAGACT CCATGAAGGCACCGTTCAATCTTCTAACAACGTCACAGACTGGGCTGGTACCGTCTGGATTCTCCCCATCTTGGGTGCTTACGTAGCTGATGCTCACTTA GGCCGATTCTGGACCTTCGTCGTTGCCTCTTCCATCTATCTTTCCGGGATGATACTGCTAACCCTGGTGGTCACAATACCGGGCCTGAAACCTCCGACAT GCCCAGAGAGCGATCCAGGGTGCGACATCCAGCCCTCGTCCTTACAAAAGGGCATATTCTACTTCGCACTGTACATAATAGCGATCGGAACAGGTGGAAC CAAGCCGAACATTTCCACAATGGGGGCAGACCAGTTTGATGAGTTTGAGCCTAAGGAGAGAACTCACAAGCTATCCTTCTTCAACTGGTGGATGTTCAGC ATCTTCTTTGGCACGCTCTTCTCCAACACTTTCCTGATTTACCTTCAGGACCGTGTCGGGTGGACGCTTGGCTATGGACTCCCCACTGCAGGGCTTGGGT TGTCCATAGTTGTGTTCTTGTTTGGGACTCCTTTGTATAGGCACAAGCTTCCTGCAGGAAGCCCTTTTACTAAAATGGCTCAAGTGCTTGTTGCTGCTAC TAGGAAATGGAACGTTGAGCTTCCCGATGATCCCAAACAGCTCTATGAACTTGGTGCTGATCAGTATGATAAGCTCGGGAAGTTCACAGTTGATCACACC CCTTCCTTGAGGTTTCTAGACAAAGCAGCAGCAAGAACAGGGAAAAGCTCACCATGGAACCTAACACCAGTAACCCAAGTGGAAGAAACAAAGCAAATGC TAAAGATGCTCCCAATCTTAGCAATCACAATAATCCCAAGCGCCATAGTAGCCCAATCAGGAACCATGTTCATCAAACAAGGAGCAACAATGGACAGAAG CATGGGACCCAATTTCGAAATCCCAGCAGCTTTACTCCAAAGAATGGGGATCGGACTTATCCTCCAGATCATGGTCATGGTATCTGCCTGCCTTGCCGAG CAAAAGAGGCTCGAAACCGCACATCAACACAACAAACTACAAAAATTGGACCAGGTACCACTCACCATTTTCGTACTGATGCCTCAATTTGCTCTGCTGG GAGTGGCGGATTGCTTCCTGGAAGTTGCGAAACTCGAATTCTTCTACGATCAGGCTCCGGAAGGGATGAAATCTCTGGGGACTTCTTACTTCACAAGCAG CATTGGGTTGGGGCAGTTCCTGAGTAGCTTCTTGGTGAGGCTTGTGGCGAATTTGAGTGCGAGGAATGGCAAAGGTTGGATATTGAACAATTTGAATGTA TCGCATTTGGATTACTATTATGCGTTGCTGGCGGGTTTGGCTTTGGTGAACTTGATTGGGTTCTTTGTAGTGGCTAAGTTCTTTGTGTACAATAATGTAG TTGATTTAGAGAGCAGTAGGAATGTCGTTGTAGTACAGCATCAAGATGATAATGATGATGATGATGGTGGTGGGTGTCACAAGCAATGA
AA sequence Show only first row Show all	>Lus10024935 pacid=23178905 polypeptide=Lus10024935 locus=Lus10024935.g ID=Lus10024935.BGIv1.0 annot-version=v1.0 MKNLASQEKGDDAYTEDGTVSLRGSPVLRSKTGRWRACSFIVGYEVFERMAYYGIATNLVVYLGERLHEGTVQSSNNVTDWAGTVWILPILGAYVADAHL GRFWTFVVASSIYLSGMILLTLVVTIPGLKPPTCPESDPGCDIQPSSLQKGIFYFALYIIAIGTGGTKPNISTMGADQFDEFEPKERTHKLSFFNWWMFS IFFGTLFSNTFLIYLQDRVGWTLGYGLPTAGLGLSIVVFLFGTPLYRHKLPAGSPFTKMAQVLVAATRKWNVELPDDPKQLYELGADQYDKLGKFTVDHT PSLRFLDKAAARTGKSSPWNLTPVTQVEETKQMLKMLPILAITIIPSAIVAQSGTMFIKQGATMDRSMGPNFEIPAALLQRMGIGLILQIMVMVSACLAE QKRLETAHQHNKLQKLDQVPLTIFVLMPQFALLGVADCFLEVAKLEFFYDQAPEGMKSLGTSYFTSSIGLGQFLSSFLVRLVANLSARNGKGWILNNLNV SHLDYYYALLAGLALVNLIGFFVVAKFFVYNNVVDLESSRNVVVVQHQDDNDDDDGGGCHKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024935 [exp]	0	1
AT5G42760			Leucine carboxyl methyltransfe...		Lus10000713 [exp]	2.4	0.9211
AT5G16720			Protein of unknown function, D...		Lus10010755 [exp]	2.8	0.9169
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10014858 [exp]	4.9	0.9171
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10007429 [exp]	6.9	0.9198
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10006778 [exp]	8.9	0.8903
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	10.0	0.8993
AT5G51260			HAD superfamily, subfamily III...		Lus10038847 [exp]	14.3	0.8962
AT3G18870			Mitochondrial transcription te...		Lus10026325 [exp]	17.1	0.8906
AT1G18265			Protein of unknown function, D...		Lus10035638 [exp]	17.3	0.8846
AT5G67090			Subtilisin-like serine endopep...		Lus10009748 [exp]	20.8	0.8729

Compare expression of checked genes

Lus10024935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.