Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61170 855 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 500 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 490 / 3e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 481 / 2e-158 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 466 / 8e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 452 / 1e-146 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 448 / 2e-145 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 445 / 6e-144 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 444 / 7e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 435 / 1e-141 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022890 [exp] 1506 / 0 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 535 / 3e-176 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 510 / 6e-168 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 508 / 3e-167 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 498 / 9e-165 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 493 / 8e-163 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 475 / 4e-156 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 461 / 6e-150 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 456 / 6e-149 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155100 [exp] 1064 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 542 / 2e-180 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 525 / 2e-172 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 514 / 4e-169 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 483 / 2e-160 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G237100 [exp] 477 / 7e-157 AT3G02010 967 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 474 / 4e-155 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G129100 [exp] 475 / 3e-153 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 467 / 4e-153 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 465 / 2e-152 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024936 pacid=23178952 polypeptide=Lus10024936 locus=Lus10024936.g ID=Lus10024936.BGIv1.0 annot-version=v1.0 ATGCACAAATTACGAACAGTGCTTTCGTATTCCACGATTGAATCCAACAGGCGGCTTAATGGGTTGTCAAAGTTGGGACGCCTGGAAGAGGCACGCCAAC TGTTCGACGAAATGCCTGATAAGGATGAGTTCACTTGGAACACCATGGTTGCTGCTTATGCTAATTCAGGAAGGTTAACAGAGGCTAGGAAAGTTTTTCA TGACTGTCCCATCAAGAGTTCGATAACTTGGTCGGGTTTGATAGCTGGGTACTGTAGACATGGATGTGAAAGTGAAGAAGCATTTGAGTTGTTTTCAGGG ATGCATGTCCAAGGACAAAGGCCAACCAGTTACTCAATGGGGAGTGTTCTTAGGTTGTGTTCGACGACTACTTCTCTTCAAAGAGGACAACAGATTCATG GCTATGCTTTGAAAACTGGAAACGATGTTGATGTTTTCGTTGCTACTGGCCTTGTGGATATGTATGCTAAGTGTATGTGCATTTCGGAAGCAGAACGTCT TTTCCGGATGGTGGCTGATGCTAAGAGTCATGCTACCTGGACTGCAATGCTTACAGGGTACTCTTATAATGGGGAATGCTTCAAAGCCATAGACTTTTTT AGGCATATGAGAGCAGAGGGAATTGAGATAAACCAATTCACATTTCCGTCGGTTTTGACAGCTTGTGCAGCTGTTTTAGCTCGTGATTTCGGAGTTCAGG TCCATGATTGCATAGTCAAGAGTGGTTTTGGGGCTAACATATTTGTTCAGAGTTCCCTGGTTGACATGTATGCAAAATACAGGGACTTAACCAGTGCAAT GAAGATGCTAGAAAGCATGGAAATCGACGATCCTATTTCGTGGAACTCGATGATAGCTGGGTGTGTGAATGCGGGTTGTGAAGGTGAGGCTTTGAACATG TTTCGGACAATGCATGCCAAAAATATACAGATCGATCACTATACTTTCCCATCAGTGCTCAACTCTCTAGCATCTTCAAAAGATGTCCAGAATGCCAAGT GCGTCCACTGCTTGCTTTTGAAAAGTGGATTTGGGGGATACCAGGTTGTAAATAATGCTCTTGTAGACTTGTATGCCAAACAAGGGAAAATGGATTTGGC GTTGACCATATTCAACAATATGGAAGATAGAGACGTTGTCTCTTGGACGTCCTTGGTTGTAGGGTATTCACACAATAGATCTTTTGAAGATTCTATAAAG CTATTTTGTGAAATGAAAGTTACTGGGATACAGCTAGATCATCTTCTTGTTGCTAGCGTTTTGAGTTCTTGTGCGGAACTAACAGTTATGGAACTCGGGC AGCAAGTTCATGGTACACTTATTAAATCTGGTCTCGAATCATCTTTGTCGATTGACAATTCTCTTGTAACTATGTATGCTAAGTGTGGCGCGATCCTCGA TGCCAATCGTGTCTTTGGCTCCATGAAGACTCGGAATGTGATAAGCTGGACAGCATTGATAGTTGGATACGCTCAAAACGGTAAAGGAATCTACTCTTTA CTCTTGTATGAACAAATGCTTTCTGCTGGTATTGACCCGGATTATATTACATTCATTGGATTACTATTCGCCTGCAGTCATACTGGTTCTGTTGAAAAGG GTCGCTCCTACTTTGATTCAATGGATAAAGTGTATGGGATCCAACCAGGACCTGAGCATTACGCATGCATGATTGATCTCTTCGGCCGCTCAGGGAAACT AGGCGAGGCAAAGAAAATACTGGACCAAATGGCTGGAGTAGAACCGGATGCGACTGTGTGGAAGTCCCTTCTTGCAGCATGTAGAATGCATAAAGATTTG GAATTGGGAGAAAGGGCAGCTAATAACCTATTTGAATTGGAGCCAAAGAATAGCATGCCTTATGTAATGTTGTCAAACATGTACGCTGCTGCTGGTAGAT GGGAAGATGCCGCAAGAATTAGAAAGTTGATGAAGTCTAGAGGAATTAGTAAGGAGCCCGGGTCAAGCTGGACTCAAACAAATGGCAAAGTCTACACCTT TGTCTCTGAGGATAGAAGTCACCCTATGATGGCTGATATTTATTTGAAAGTTGACGAGATGATTGCACGAATCAAGGGAGCTGGCTACGTTCCGGACATG AGTTTTGCGCTTCATGACATGGAAATGGAAGGGAAAGAGCTCGGACTTGCTTATCACAGCGAGAAATTGGCTGTTGCTTTTGGACTGCTGTCTCAACCTC GTGGGTCGCCGCCTGCCTTTCAGTCCTGGGCTGGAAACGTTATCCCAGCAGCAGACTCAGAAGTTGAGTGGATTCGATTGATAGAAGTTGTCAAGAAGTT GCGTAACGCACTGGGTGCTTGTTTCGGAGAGTCGGAACAAGGGCAGTCGGTAACAGAAGCCACCAGGGGATAG
AA sequence Show only first row Show all	>Lus10024936 pacid=23178952 polypeptide=Lus10024936 locus=Lus10024936.g ID=Lus10024936.BGIv1.0 annot-version=v1.0 MHKLRTVLSYSTIESNRRLNGLSKLGRLEEARQLFDEMPDKDEFTWNTMVAAYANSGRLTEARKVFHDCPIKSSITWSGLIAGYCRHGCESEEAFELFSG MHVQGQRPTSYSMGSVLRLCSTTTSLQRGQQIHGYALKTGNDVDVFVATGLVDMYAKCMCISEAERLFRMVADAKSHATWTAMLTGYSYNGECFKAIDFF RHMRAEGIEINQFTFPSVLTACAAVLARDFGVQVHDCIVKSGFGANIFVQSSLVDMYAKYRDLTSAMKMLESMEIDDPISWNSMIAGCVNAGCEGEALNM FRTMHAKNIQIDHYTFPSVLNSLASSKDVQNAKCVHCLLLKSGFGGYQVVNNALVDLYAKQGKMDLALTIFNNMEDRDVVSWTSLVVGYSHNRSFEDSIK LFCEMKVTGIQLDHLLVASVLSSCAELTVMELGQQVHGTLIKSGLESSLSIDNSLVTMYAKCGAILDANRVFGSMKTRNVISWTALIVGYAQNGKGIYSL LLYEQMLSAGIDPDYITFIGLLFACSHTGSVEKGRSYFDSMDKVYGIQPGPEHYACMIDLFGRSGKLGEAKKILDQMAGVEPDATVWKSLLAACRMHKDL ELGERAANNLFELEPKNSMPYVMLSNMYAAAGRWEDAARIRKLMKSRGISKEPGSSWTQTNGKVYTFVSEDRSHPMMADIYLKVDEMIARIKGAGYVPDM SFALHDMEMEGKELGLAYHSEKLAVAFGLLSQPRGSPPAFQSWAGNVIPAADSEVEWIRLIEVVKKLRNALGACFGESEQGQSVTEATRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61170			Tetratricopeptide repeat (TPR)...		Lus10024936 [exp]	0	1
AT2G33680			Tetratricopeptide repeat (TPR)...		Lus10021232 [exp]	3.7	0.8986
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040049 [exp]	6.9	0.9064
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10026402 [exp]	12.5	0.8967
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022703 [exp]	16.5	0.8817
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	23.2	0.8817
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	23.5	0.8845
AT3G55160			unknown protein		Lus10007252 [exp]	23.7	0.8853
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	24.7	0.8876
AT1G42440			unknown protein		Lus10030752 [exp]	25.0	0.8739
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10014113 [exp]	30.0	0.8651

Compare expression of checked genes

Lus10024936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.