Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14300 299 / 2e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 272 / 5e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G55550 251 / 2e-79 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 243 / 3e-76 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G07810 236 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 224 / 7e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G17640 182 / 2e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 168 / 2e-48 XF41, ATRBP1 RNA-binding protein 1 (.1) AT3G13224 159 / 7e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 146 / 1e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022889 [exp] 425 / 5e-148 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043124 [exp] 301 / 1e-98 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032624 [exp] 281 / 6e-91 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023740 [exp] 254 / 5e-81 AT4G14300 276 / 6e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032579 [exp] 247 / 3e-77 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 246 / 1e-76 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10011783 [exp] 239 / 6e-75 AT4G14300 290 / 1e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10000537 [exp] 239 / 5e-74 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 238 / 1e-73 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258600 [exp] 343 / 2e-115 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 332 / 5e-111 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G170400 [exp] 326 / 3e-108 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 321 / 3e-106 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G088100 [exp] 243 / 1e-75 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 242 / 2e-75 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 242 / 2e-75 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 242 / 3e-75 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 241 / 5e-75 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 237 / 2e-73 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10024937 pacid=23178868 polypeptide=Lus10024937 locus=Lus10024937.g ID=Lus10024937.BGIv1.0 annot-version=v1.0 ATGGATTCGGACGAAGGGAAGCTTTTCGTCGGAGGCGTATCGTGGGAGACGACGGAGGACACCCTCCGTGACTACTTCGCCAGCTACGGCGACGTCTCTC AGGTCGTCATCATGCGCGACAAAACCACCGGCCGCCCCCGCGGATTCGGCTTCGTCGTCTTCTCTGATCCTGATGTGCTCGATCGCGTCCTCCACGAATC CCACACCATCGATGGCCGTACCGTGGAGGCGAAACGGGCTTTATCGAGAGAGGAGCAGCAAACATCTTCTAGAACTGGGAATTCTAATCCTGGCAGGGGC TCTGGTGGTGATGCAGGAGGGAATTTCAAGACCAAGAAGATATTTGTAGGTGGGTTGCCTCCAACACTGACTGAAGATGGGTTTCGAGGCTATTTTGAGA CTTATGGCCCTGTGGCTGACGTGGTAGTGATGTATGACCAGCATACTCAGAGGCCGCGTGGGTTTGGGTTTGTCACTTTTGACGATGAAGAAGCAGTCGA CAGGGTACTCCACAAGACTTTCCATGAGTTGAATGGTAAGAGTGTTGAAGTAAAAGCAGTAGACAGGGTACTCCAAAAGACTTTCCATGAGTTGAATGGC AAGAGTGTCGAAGTAAAGCGTGCTCTTCCGAAAGACTCGAATCCTGGTGGCAACGGACGCAATGCAGGCTACCAGGGTTACGGTGGTTCTGGTGCTAATT CAAGCGATGGTAGGATGGATGGAAACCGATACATGCAGTCTCAAACATCTGCTGCTGGGTATGGGGCTTATTCTGGTTATGGTGCACCGAGTTACGGTTA TGGAGCACCGAACTATGGTGGGTATGGCGCTTATGGTGTTGGTGCTGGATTTGGCGGTGGAACTGGTGCATACGCCATTCACGGTCAATGGGGTGGCCAA GCTCCAGCTAGCTATGGCGCTTTTGGCTACAACGCTGCAGCAGGAGGATATGGAGCAGCAGGAGCAGGAGCACCATGGAATGCTTCAGGTGGCGGTAACT ATGGGGGAAGTGACGGTCCTTACTCAGGTGGGTACAGTGGTGGGCGTCCTGGAAATGCTCCGAACAGCACTGGCAATGCAGTAGGCGGGATGGAGCATCA GGGAGGGGGAAACTACGGGGATCACAGTAATGGGAATGCAGGGTATGAACAACAAGAGAGTTGGGGATCAGATCCATCAGGTGGTAGCTACAATGGTGGC CACTCGAGGCAAGCATCCTAG
AA sequence Show only first row Show all	>Lus10024937 pacid=23178868 polypeptide=Lus10024937 locus=Lus10024937.g ID=Lus10024937.BGIv1.0 annot-version=v1.0 MDSDEGKLFVGGVSWETTEDTLRDYFASYGDVSQVVIMRDKTTGRPRGFGFVVFSDPDVLDRVLHESHTIDGRTVEAKRALSREEQQTSSRTGNSNPGRG SGGDAGGNFKTKKIFVGGLPPTLTEDGFRGYFETYGPVADVVVMYDQHTQRPRGFGFVTFDDEEAVDRVLHKTFHELNGKSVEVKAVDRVLQKTFHELNG KSVEVKRALPKDSNPGGNGRNAGYQGYGGSGANSSDGRMDGNRYMQSQTSAAGYGAYSGYGAPSYGYGAPNYGGYGAYGVGAGFGGGTGAYAIHGQWGGQ APASYGAFGYNAAAGGYGAAGAGAPWNASGGGNYGGSDGPYSGGYSGGRPGNAPNSTGNAVGGMEHQGGGNYGDHSNGNAGYEQQESWGSDPSGGSYNGG HSRQAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10024937 [exp]	0	1
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	6.3	0.8237
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10022889 [exp]	10.1	0.7731
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	11.8	0.7788
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009565 [exp]	13.9	0.7952
AT3G14240			Subtilase family protein (.1)		Lus10017301 [exp]	21.0	0.7790
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	26.5	0.7222
AT3G11690			unknown protein		Lus10021243 [exp]	28.2	0.7749
AT4G05400			copper ion binding (.1.2)		Lus10027072 [exp]	28.7	0.7231
AT1G71730			unknown protein		Lus10042772 [exp]	32.0	0.7075
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Lus10011128 [exp]	32.8	0.7645

Compare expression of checked genes

Lus10024937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.