Plant FIBer expression Database

Lus10024940 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G44005 42 / 2e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003608
[exp]
94 / 7e-27 AT5G44005 55 / 4e-11 unknown protein
Lus10003610
[exp]
94 / 2e-26 AT5G44005 59 / 1e-12 unknown protein
Lus10008220
[exp]
90 / 3e-25 AT5G44005 55 / 4e-11 unknown protein
Lus10008224
[exp]
86 / 1e-23 AT5G44005 57 / 6e-12 unknown protein
Lus10008223
[exp]
79 / 1e-20 ND 41 / 6e-06
Lus10003609
[exp]
74 / 7e-19 AT5G44005 51 / 9e-10 unknown protein
Lus10008222
[exp]
69 / 3e-15 AT4G12010 327 / 4e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Lus10003607
[exp]
60 / 4e-13 ND 48 / 2e-08
Lus10008219
[exp]
61 / 6e-13 AT5G44005 56 / 2e-10 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G192100
[exp]
54 / 5e-11 AT5G44005 49 / 4e-09 unknown protein
Potri.002G257600
[exp]
45 / 2e-07 ND /
PFAM info
Representative CDS sequence
>Lus10024940 pacid=23178991 polypeptide=Lus10024940 locus=Lus10024940.g ID=Lus10024940.BGIv1.0 annot-version=v1.0
ATGAAGCTCCTGACTGCTCAAAGCTTGAAGAGAATCCAGTTCTTGATGTGGGGGAAGAGAAGAAAAGTTGATCAACTGGTTTGCTCATGTAGCAGGTCTT
ATGTCCCAAAGCAGTGGGTTTACAAGTTCAAGGCACAGTGGAACAAGGCTATAGGGTGGCATAAAAGCAGCAGTAGTCCTCAGTATAGCTATGATATCCA
TAGCTATTCCCTCAACTTCGACGAGGGTAGGCTGTCATGA
AA sequence
>Lus10024940 pacid=23178991 polypeptide=Lus10024940 locus=Lus10024940.g ID=Lus10024940.BGIv1.0 annot-version=v1.0
MKLLTAQSLKRIQFLMWGKRRKVDQLVCSCSRSYVPKQWVYKFKAQWNKAIGWHKSSSSPQYSYDIHSYSLNFDEGRLS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10024940
[exp]
0 1
AT1G68200 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10034624
[exp]
6.2 0.9462
AT1G18200 AtRABA6b RAB GTPase homolog A6B (.1) Lus10042009
[exp]
6.9 0.9454
AT4G35020 ROP6, ARAC3, RH... RHO-RELATED PROTEIN FROM PLANT... Lus10039899
[exp]
10.6 0.9359
AT1G79620 Leucine-rich repeat protein ki... Lus10021003
[exp]
14.5 0.9378
AT1G68200 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10035256
[exp]
15.7 0.9343
AT5G12870 MYB ATMYB46 myb domain protein 46 (.1) Lus10039610
[exp]
16.4 0.9356
Lus10026494
[exp]
17.3 0.9209
AT3G55990 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29... Lus10028974
[exp]
17.5 0.8881
AT5G45970 ATRAC2, ATROP7,... RHO-RELATED PROTEIN FROM PLANT... Lus10025431
[exp]
17.5 0.8971
AT1G48880 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 ... Lus10042789
[exp]
18.5 0.9180

Lus10024940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.