Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 602 / 0 BGLU17 beta glucosidase 17 (.1.2) AT2G44450 528 / 0 BGLU15 beta glucosidase 15 (.1) AT5G44640 521 / 0 BGLU13 beta glucosidase 13 (.1) AT3G60130 519 / 0 BGLU16 beta glucosidase 16 (.1.2.3) AT5G42260 511 / 4e-178 BGLU12 beta glucosidase 12 (.1) AT3G60140 491 / 2e-169 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT2G25630 476 / 1e-164 BGLU14 beta glucosidase 14 (.1) AT1G26560 466 / 2e-160 BGLU40 beta glucosidase 40 (.1) AT5G24550 465 / 1e-159 BGLU32 beta glucosidase 32 (.1) AT5G54570 464 / 2e-159 BGLU41 beta glucosidase 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022883 [exp] 1073 / 0 AT2G44480 599 / 0.0 beta glucosidase 17 (.1.2) Lus10003915 [exp] 594 / 0 AT2G44480 617 / 0.0 beta glucosidase 17 (.1.2) Lus10019531 [exp] 584 / 0 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 560 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 559 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 550 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10037473 [exp] 548 / 0 AT2G44480 590 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 544 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10024065 [exp] 526 / 0 AT5G44640 511 / 2e-178 beta glucosidase 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G227300 [exp] 606 / 0 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227200 [exp] 605 / 0 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.001G015100 [exp] 559 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 547 / 0 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 545 / 0 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 533 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G227400 [exp] 530 / 0 AT2G44480 513 / 3e-180 beta glucosidase 17 (.1.2) Potri.005G059500 [exp] 520 / 0 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.001G222800 [exp] 511 / 7e-178 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2) Potri.002G219600 [exp] 510 / 1e-177 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10024941 pacid=23178895 polypeptide=Lus10024941 locus=Lus10024941.g ID=Lus10024941.BGIv1.0 annot-version=v1.0 ATGGATATGAAAAAGACACATTCTTGTTTACTGGGTAGAACTGCTATCATTCCCTGCTGTATCCTGTTTTTCCTGCAGTTGAACCAATTTTCAGCCTTTG ATGTTGTTGATAACGAGTATCCATCCTCACTCCTCAATCGAAGTAGTTTTCCAGCTGGTTTCATCTTTGGAGCTTCCTCCAGTGCTTACCAATACGAAGG AGCATCCTTCGTAGATGGAAAAGGAATAAGCAACTGGGATGTTTTCGTCAGAGAGCAACCAGAGAAGATATTGGATCATACTACTGGAGATGTAGCTGAA GATTTTTACAGTCGTTATAAGGAGGACGTCAAGCTGATGAAGGAAATCGGTTTGGATGCCTTCCGGTTCTCTATCGCATGGTCGCGTGTTATTCCTCGTG GGAAAATTAGCGAGGGGATCAATCAACTTGGTGTTGATTTCTACAACAACCTCATTGATGAGCTTCTGCTGAATGGTATACAGCCTCAAGCGACATTGAT GCATTGGGATCTTCCGCAGGCTCTTGAAGACGAGTATGGTGGATTCCTAAGCTCTAAGATTGTGGATGATTTTCGTGACTATGCGGATTTCTGCTTCGAG CAATTCGGCGATAGGGTGAAGAACTGGATTACTGTGAACGAGCCAAACTCGATTGCCTCTAAAGGATACGAGCAGGGCACGAATTCGCCCGGTCGTTGCT CTAGTTATGTGGCTAATTGTACAGATGGGAACTCTGCCACGGAGCCGTACATTGTGCTTCACAACATTCTTCTTTCTCACGCAGCTGCTTCAGATGTGTA CAGAAGAAAGTACAAGGCTTCTCAGAAGGGGATGCTAGGTATGTCGATATCGACTAGATGGTATGTCCCCAAGTACCCAACAACTGAATGCAGAAAGGCT GCCTCCAGAGCTCTAGATTTCGGTTTCGCATGGATGGCTCGTCCAGTGGTGCATGGTGACTATCCCAAATCGATGAAAGCTCTGGTCAGTGACAGGCTAC CGAAGTTCACAAAAGAACAGAAGCAGATGCTGAAAGGGTCTGTTGATTTCCTTGGAGTGAATTACTACTCAGCATATTATGCGGAAGATGTTCCATATTC GAGTATTGATCCGAGTTATACAACAGATAGCCTTGTCAATCTCTCAATGTACAAGAATGGCATCCCCATAGGCCAGCCGACTGCTTGTGACTGGCTCTAT ATCTATCCGGAAGGACTGCTCGAAATCTTGGTATATGTGAAGAACGAGTACAATATTCCGGTATTCCTGACCGAAAACGGGGTGGCTGATCTGAGTAACA ACTCAATGCCTCTGAATGATGCTCTGGATGACCAGTTGAGGATCAAATTCCACTTCCTTCACATTAAATTTCTGCTAGAATCTGTGAAGGCTGGAGTTGA TGTGAAAGGGTACACTTTGTGGTCGCTTCTCGATAATTTCGAATGGGAACTTGGCTACACTGTTCGTTTCGGTATAACCTTTGTAGACTTCGAGAATGAT CTGAAAAGATACCCGAAACGTTCTGCACTTTGGTTCAGAGATTTTCTACTGAAGCAGGAAAATGGAACTACATTGTTGAACCCAGACATGTAA
AA sequence Show only first row Show all	>Lus10024941 pacid=23178895 polypeptide=Lus10024941 locus=Lus10024941.g ID=Lus10024941.BGIv1.0 annot-version=v1.0 MDMKKTHSCLLGRTAIIPCCILFFLQLNQFSAFDVVDNEYPSSLLNRSSFPAGFIFGASSSAYQYEGASFVDGKGISNWDVFVREQPEKILDHTTGDVAE DFYSRYKEDVKLMKEIGLDAFRFSIAWSRVIPRGKISEGINQLGVDFYNNLIDELLLNGIQPQATLMHWDLPQALEDEYGGFLSSKIVDDFRDYADFCFE QFGDRVKNWITVNEPNSIASKGYEQGTNSPGRCSSYVANCTDGNSATEPYIVLHNILLSHAAASDVYRRKYKASQKGMLGMSISTRWYVPKYPTTECRKA ASRALDFGFAWMARPVVHGDYPKSMKALVSDRLPKFTKEQKQMLKGSVDFLGVNYYSAYYAEDVPYSSIDPSYTTDSLVNLSMYKNGIPIGQPTACDWLY IYPEGLLEILVYVKNEYNIPVFLTENGVADLSNNSMPLNDALDDQLRIKFHFLHIKFLLESVKAGVDVKGYTLWSLLDNFEWELGYTVRFGITFVDFEND LKRYPKRSALWFRDFLLKQENGTTLLNPDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10024941 [exp]	0	1
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10024916 [exp]	1.4	0.9500
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	4.1	0.9583
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	8.7	0.9494
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	12.4	0.9434
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	13.1	0.9450
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020359 [exp]	14.1	0.9295
AT2G19460			Protein of unknown function (D...		Lus10008471 [exp]	15.0	0.9327
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036537 [exp]	16.4	0.9356
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10011445 [exp]	16.7	0.9144
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	19.7	0.9331

Compare expression of checked genes

Lus10024941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.