Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65380 618 / 0 MATE efflux family protein (.1) AT5G44050 579 / 0 MATE efflux family protein (.1) AT5G10420 556 / 0 MATE efflux family protein (.1) AT1G33110 438 / 1e-146 MATE efflux family protein (.1.2) AT1G33100 430 / 1e-143 MATE efflux family protein (.1) AT1G33080 422 / 1e-140 MATE efflux family protein (.1.2) AT1G33090 421 / 3e-140 MATE efflux family protein (.1) AT1G61890 405 / 1e-133 MATE efflux family protein (.1) AT1G11670 399 / 1e-131 MATE efflux family protein (.1) AT1G47530 399 / 1e-131 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002645 [exp] 707 / 0 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 704 / 0 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 611 / 0 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 595 / 0 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10020951 [exp] 454 / 5e-153 AT5G65380 543 / 0.0 MATE efflux family protein (.1) Lus10003869 [exp] 445 / 3e-149 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10042130 [exp] 400 / 3e-132 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10039263 [exp] 395 / 4e-130 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10027504 [exp] 394 / 1e-129 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010200 [exp] 670 / 0 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 610 / 0 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 532 / 0 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.013G069700 [exp] 431 / 6e-144 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G102000 [exp] 417 / 4e-140 AT5G65380 437 / 7e-152 MATE efflux family protein (.1) Potri.011G002800 [exp] 405 / 6e-134 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.013G069600 [exp] 404 / 1e-133 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 399 / 1e-131 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.013G069250 [exp] 397 / 7e-131 AT3G03620 491 / 6e-171 MATE efflux family protein (.1) Potri.013G069400 [exp] 395 / 4e-130 AT3G03620 527 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05004 [flax] [poplar] IFRD Interferon-related developmental regulator (IFRD) CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10024945 pacid=23178959 polypeptide=Lus10024945 locus=Lus10024945.g ID=Lus10024945.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCAAAACTTCCTCTGCTCCACGGGGAAGAAAAACTCACGAAGCAAGTCTGGACAGAGACGAAGAAGCTATGGAACATAGTGGGACCCGCGA TATTCAGCCGAGTCGCCACATACTCAATGCTAGTCATCACCCAAGCCTTTGCCGGTCACTTAGGAGACCTCGAACTCGCCGGAATCTCAATCGCCAATAA CGTCATCACCGGCTTCGACATAGGCCTACTCCTCGGAATGGCCAGCGCACTCGAAACCCTCTGTGGCCAAGCGTACGGAGCCCAAAAATACTCCATGATG GGAATCTACTTACAGAGATCGTGGATCGTACTCTCCCTCTGCTGCATCCTGATTCTCCCTCTGTATCTCTTCGCATCACCGATCTTGATCTTGCTGGGCC AGCCGGATGACGTGGCCCGGGTTACGGGGGTTGTGTCGTGGTGTTTTATTCCGCTTCATTTTGGGTTGGCTCTCCAGTTCCCGATACAGAGGTTTCTGCA GTGTCAGCTGAAGAATTCAGTGATCGCTTGGCTTTCATTGGTGACGCTGGTGGTTCATGTGGTTGTGAGTTGGGTTTTTGTTTATGGGATGCAGATGGGT GTGGTTGGTACAGCTTTGACTCTGAGTTTTTCGTGGTTGCTTTTGGTTTTGGGTTGTTTCGGTTATGTGGTTTGTGGGTGGTGCCCGCTTACTTGGACTG GTTTCTCCATGGAAGCTTTTGATGGCCTCTGGGATTTCACTAAGCTCTCTGCTGCATCCGGTGTCATGCTCTGTCTGGAGAATTGGTACTACAGAATACT CATCTTAATGACTGGGAATCTTCAGAATGCAACGATTGCAGTGGATGCTCTCTCCATTTGCATGGCAATTAATGGGTTGGAGATGATGATTCCACTTGCT TTCTTCGCAGCCACTGGAATAAGGGTTGCGAACGAACTCGGAGCAGGGAATGGGAAGGGAGCAAAGTTTGCGACCGTGGTGTCGGTAGTACAATCGACCA TCATCGGGGTCTTCTTTTGGATACTGATTTTGATATACAGTGACAAAATCGGGTGGATTTTCACAGACAGTGAAATAGTTGTGGATGCAGTAAACCAACT CTCCATCTTCCTCGCTTTCACTATTTTGCTCAACAGTGTCCAACCCATCCTCTCAGGAGTGGCTGTTGGTTCAGGATGGCAAAAGTATGTGGCTTACATA AACTTGGGTTGTTACTATGTCATTGGACTTCCCCTTGGATTTCTCATGGGTTGGGTCCTTGATTTAGGAGTTAAGGGGATATGGAGTGGAATGATATTCG GAGGGACGGCAGTTCAAACACTAATATTGGCTGTTATAACTATTCGATGTGATTGGGATAAAGAGAGGGAAGGCAGCCGGTTCCTCATCCTCCACGACCG TAACAAATCATCTCTCGCCGCCAAAGCCAAACCGTCACTGGCCACACAGCAAAAGACCCCGCTGGCCGGGTTCCTCGTCCAGCTCTACGACACGGAGAAG CACAAGGCAAGGATTACAGAGGCTGCATTGGGAGCGATGGTTTACACACTGACCAGGATGCCGGCGGGTCCGGAGGAGGAGGAGTTCGTGGAGTCGAATC GAATGGGCCTAGTGGACGACTGCCTCCGGGTGATCAGGAAGAGGAGGAGCTCAAGGCTGGTAGCGATGATCGTTGATGATGTTGCGGGAGGCAACGAGTT GCTTGGAGTGTTTGTGCCGAATCTGTTCGAGGAGGCGAAGAAATTGAGCGGCGGAAGTTCGAGCAAGGAGGAGAAGCATCCACCTGAACTAGTTGCAGCT GCAATATCATCCTGGTGTTTCATTCTCTCGAACGACTACTACAGAATCTGCCGAACCCACTGGCAAACCAAGATCCCTCTCCTCCACCGTTTCCTCGACC ATGACAACGACTCACTCGCCATTGCTGCAGCAGGGGCACTAGCCTTGATCTTCAAGATGGAATCTTACAACAATTCCACGGAAACAGAGGCATGCCCTTT GGAATGGTACAAGAAGAGCATTGTCGAGAAGCTGGAGGAGAGGAAGCTTGCGTTGGAAGCAACCGGCAACAACAAAGAAGAAGAGGAGGGCAACAAGATG ACCACGAGGCTGGAATTCATCGCAAAGATCTTCAAAGAAGGATTCAAAGCGATGGAGATGAGGACATGGGCCGGGAGACTCCAACCGACAATTTCTGAAG AGGTTCCTCGGGGAAGAGGCGTTCGCTTGTACTAG
AA sequence Show only first row Show all	>Lus10024945 pacid=23178959 polypeptide=Lus10024945 locus=Lus10024945.g ID=Lus10024945.BGIv1.0 annot-version=v1.0 MEEAKLPLLHGEEKLTKQVWTETKKLWNIVGPAIFSRVATYSMLVITQAFAGHLGDLELAGISIANNVITGFDIGLLLGMASALETLCGQAYGAQKYSMM GIYLQRSWIVLSLCCILILPLYLFASPILILLGQPDDVARVTGVVSWCFIPLHFGLALQFPIQRFLQCQLKNSVIAWLSLVTLVVHVVVSWVFVYGMQMG VVGTALTLSFSWLLLVLGCFGYVVCGWCPLTWTGFSMEAFDGLWDFTKLSAASGVMLCLENWYYRILILMTGNLQNATIAVDALSICMAINGLEMMIPLA FFAATGIRVANELGAGNGKGAKFATVVSVVQSTIIGVFFWILILIYSDKIGWIFTDSEIVVDAVNQLSIFLAFTILLNSVQPILSGVAVGSGWQKYVAYI NLGCYYVIGLPLGFLMGWVLDLGVKGIWSGMIFGGTAVQTLILAVITIRCDWDKEREGSRFLILHDRNKSSLAAKAKPSLATQQKTPLAGFLVQLYDTEK HKARITEAALGAMVYTLTRMPAGPEEEEFVESNRMGLVDDCLRVIRKRRSSRLVAMIVDDVAGGNELLGVFVPNLFEEAKKLSGGSSSKEEKHPPELVAA AISSWCFILSNDYYRICRTHWQTKIPLLHRFLDHDNDSLAIAAAGALALIFKMESYNNSTETEACPLEWYKKSIVEKLEERKLALEATGNNKEEEEGNKM TTRLEFIAKIFKEGFKAMEMRTWAGRLQPTISEEVPRGRGVRLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	0	1
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	2.8	0.9223
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023626 [exp]	3.2	0.9219
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10021895 [exp]	3.5	0.9066
AT4G04750			Major facilitator superfamily ...		Lus10033795 [exp]	3.9	0.9188
AT5G37550			unknown protein		Lus10020807 [exp]	4.0	0.9149
AT4G25830			Uncharacterised protein family...		Lus10019999 [exp]	4.5	0.9141
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009961 [exp]	6.9	0.8992
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012127 [exp]	8.1	0.8908
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023317 [exp]	8.5	0.8540
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023318 [exp]	8.7	0.8702

Compare expression of checked genes

Lus10024945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.