Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43990 487 / 5e-162 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT1G04050 483 / 1e-160 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT3G04380 386 / 2e-126 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT2G23740 122 / 3e-28 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT1G73100 116 / 1e-26 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT2G35160 107 / 1e-23 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT5G04940 102 / 2e-22 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT3G03750 99 / 6e-22 SUVR3, SDG20 SET domain protein 20 (.1.2) AT2G22740 101 / 8e-22 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G13960 97 / 9e-21 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022879 [exp] 1273 / 0 AT5G43990 455 / 2e-149 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10012513 [exp] 358 / 6e-116 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10005476 [exp] 355 / 1e-114 AT3G04380 503 / 3e-176 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022657 [exp] 340 / 2e-110 AT3G04380 412 / 2e-142 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022878 [exp] 248 / 1e-75 AT5G43990 110 / 2e-26 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10024947 [exp] 234 / 8e-70 AT5G43990 100 / 4e-23 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10027956 [exp] 172 / 5e-50 AT3G04380 226 / 3e-73 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10008198 [exp] 161 / 2e-45 AT3G04380 217 / 8e-69 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10040150 [exp] 114 / 5e-26 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G192500 [exp] 690 / 0 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.002G257400 [exp] 667 / 0 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.013G048100 [exp] 454 / 2e-150 AT3G04380 471 / 5e-161 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.009G138600 [exp] 393 / 1e-127 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.001G036800 [exp] 115 / 3e-26 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G083100 [exp] 115 / 3e-26 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.003G188700 [exp] 112 / 2e-25 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.005G129800 [exp] 112 / 5e-25 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.007G033000 [exp] 109 / 4e-24 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.013G064600 [exp] 99 / 4e-22 AT3G03750 258 / 1e-83 SET domain protein 20 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif CL0214 [flax] [poplar] UBA PF10440 [flax] [poplar] WIYLD Ubiquitin-binding WIYLD domain CL0214 [flax] [poplar] PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10024946 pacid=23178887 polypeptide=Lus10024946 locus=Lus10024946.g ID=Lus10024946.BGIv1.0 annot-version=v1.0 ATGTCGCCGAATCCCAAAGTTGCGAAAGCCATCAAGGCAATGACAGATCTTGGATTTGAGAGAGATGCAGTGAAGCCTGTATTGAGAAACCTTCTGAAGC TGTACGACAAAAACTTTGCCTTGATTGAAGAGGATAATTACAGGGCTCTAGCTGATGCTGTGCTTGATGACATGGAGAAACAGGCACAAGCACCAGAGAA GGAGAAGGAGAAGGAGAAGACTGTTGATGAGGGAAGTTCTGAGGAAGAGGGTCAGGAGGAAGAATCCCAACGCCCGCTTAAACGGCTACGCCCACACCGC TTGAGAGACCAAGAAGGGTTAGTGTCCCCTTCATCGGGAAACCACAGTCCCCTTACCAATGGTAAGTTGCCAATCCAGCCAAAGTTGGAACAAGAAGACC CCCCTTCTGAAAATTCCTTCCAGCAGCTAACAAACAAGGAAAACGCACTAGTTTTAGCAGGTTCTCCTCGAGATCCCGCAATAAGTCCAGCCAGCCAGCC CTTGTCTGCTCAGAGAAACTCATCTCAGGAACCAGTTACGAATGGAACTGTTCCGTCTGAGCAATGTTCGCCACGGGGCCTACTTGTGAGCAAAGGGAAA GAGCCCATGCCATCTCAACTTTATGTGAGAGGTAAGAAGCCTCCTGCTGGAAGAGAGCTCGCCATACGGATTGATCAGCCACCAAAGAGAAAGGATGCTG ATTCGCACTCCTTGATAGTACCTAAGGATGAGCCAATCACGGATGAGATGCCTCTCAACGAGCTTCCTCTTGCAGTTATGGGGCCATATCCTAGCAATGA AAATTCCTCTGTTAGGGACATGATAACTGAAAATGAAGCTGGTCAAAATGGAAGAACCAATGGAGATGACAGTGCTCTAGTGACTTCAAAGAAGCAACGA GTTAGGACTGATGGTGGAAGCAATAGCAGTGTGCCCTCTGCTAGCTTGGAAATTGCTTCATCCCCTTTAGGAGAGGTGAAGATATCTTTGAGCTTCCAAC CGCTGCTTGGAAGACCTAGTTTTCAGATGCCAACTATGGATCAACTGTTGAAATCAGTGGAGGAGAGATGTTCCCAACATAATTTACATGATGAAAACTT TTCTGTACAGCAAATTATGAAGGATATGTGTCAGTGCTTCTTGGAATTGGCAACTGATTCCTCTCATGAATCGCAGGAAAGGTTGGCCAATACCATTGGT GAGCATGGCATTCCCCGCAGTGTTCTTGATAACGGTGGTGGTACAAGATTGGTAGACCCCGGATCCTCCAGTTTAGCAATTGTTCCACAATGTCAGCTAG CTACCGATGCGTTGAGGTCCCTTCATGACTTGAATGACATTGCTAAGGCAGAAGAATCTGTTGAGATTCCATGGTTTAATGATGTGAACAATGAGTACCC CCCAACCTTTCACTATACACCGGGAAACCTCATTTTTCAAAATGCTCTTGTGAAGTTTACTCTTTCTCAGATCACGGCTGATAATTGTTGTGCTTCATGT GTTGGGGACTGTCTTTCTTCTTCAAGCCCTTGTGTTTGTGTTGCTGAAACTCTCTACGGGTATGCTTACACTCCAGAAGGTCTACTCAAGGATGATTTCT TGCAACTGTGCATCTCCAAGACCAGGGATCCCCAACAACAAGACCTATCCTACTGTACGGATTGTCCATTGGAGAGATCCGCAAATGAAGAAATGATAGA CCCATGCAAAGGTCATTTGAAGAGAAATTTTATAAAAGAGTGTTGGAGAAAATGTGGCTGCCATAAGAACTGTGGAAATCGTGTAGCACAGCGAGGTATA AGGCACAAGTTGCAGGTATTTTTTACATCTGATGGGAAGGGTTGGGGCCTTAGAACCCTAGAGAAGCTGCCAAAAGGATCGTTTGTTTGCGAATACAATG GAGAGATCCTAACCATCAAAGAATTGCAGCGAAGAACTACAAAACTGTCTGGGGGTGCCAAGATCGAGAACTCCGCTTCAGTTCCGTTGGATGCATATTG GAACCCAAGAGGGGCTCTGAAGGACGAAGAGTTTCTCTGTCTGGATGCAGCATACTATGGTAATGTTGCCAGGTTTATGAACCACAGGTGTCGGGATGCC AATTTAATTGAGATCCCAGTCAAGATTGATACCCCAGAGCGCCACTATTACCATCTTGCCTTCTTTACAACAAGAGAAGTGGATGCCTTTGAAGAGCTAA CTTGGGATTATGGTATCGACTTTGATGACAATGATCAAGCTCTGAAGAGATTCGAGTGCAAGTGTGGTAGCAAGTTCTGCAGGAACATGAAGCGATCAAG TAGTGAGTTCCCCCCCTAA
AA sequence Show only first row Show all	>Lus10024946 pacid=23178887 polypeptide=Lus10024946 locus=Lus10024946.g ID=Lus10024946.BGIv1.0 annot-version=v1.0 MSPNPKVAKAIKAMTDLGFERDAVKPVLRNLLKLYDKNFALIEEDNYRALADAVLDDMEKQAQAPEKEKEKEKTVDEGSSEEEGQEEESQRPLKRLRPHR LRDQEGLVSPSSGNHSPLTNGKLPIQPKLEQEDPPSENSFQQLTNKENALVLAGSPRDPAISPASQPLSAQRNSSQEPVTNGTVPSEQCSPRGLLVSKGK EPMPSQLYVRGKKPPAGRELAIRIDQPPKRKDADSHSLIVPKDEPITDEMPLNELPLAVMGPYPSNENSSVRDMITENEAGQNGRTNGDDSALVTSKKQR VRTDGGSNSSVPSASLEIASSPLGEVKISLSFQPLLGRPSFQMPTMDQLLKSVEERCSQHNLHDENFSVQQIMKDMCQCFLELATDSSHESQERLANTIG EHGIPRSVLDNGGGTRLVDPGSSSLAIVPQCQLATDALRSLHDLNDIAKAEESVEIPWFNDVNNEYPPTFHYTPGNLIFQNALVKFTLSQITADNCCASC VGDCLSSSSPCVCVAETLYGYAYTPEGLLKDDFLQLCISKTRDPQQQDLSYCTDCPLERSANEEMIDPCKGHLKRNFIKECWRKCGCHKNCGNRVAQRGI RHKLQVFFTSDGKGWGLRTLEKLPKGSFVCEYNGEILTIKELQRRTTKLSGGAKIENSASVPLDAYWNPRGALKDEEFLCLDAAYYGNVARFMNHRCRDA NLIEIPVKIDTPERHYYHLAFFTTREVDAFEELTWDYGIDFDDNDQALKRFECKCGSKFCRNMKRSSSEFPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10024946 [exp]	0	1
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10032174 [exp]	5.4	0.8204
AT2G45730			eukaryotic initiation factor 3...		Lus10034521 [exp]	6.9	0.7906
AT1G48360			zinc ion binding;nucleic acid ...		Lus10041269 [exp]	9.9	0.7777
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	9.9	0.7901
AT3G50430			unknown protein		Lus10022468 [exp]	10.4	0.8067
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	11.0	0.8160
					Lus10028270 [exp]	15.1	0.7858
AT1G06590			unknown protein		Lus10043409 [exp]	17.3	0.8038
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	19.0	0.7888
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10032338 [exp]	21.8	0.7771

Compare expression of checked genes

Lus10024946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.