Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43990 52 / 5e-07 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT1G04050 47 / 2e-05 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022878 [exp] 392 / 1e-136 AT5G43990 110 / 2e-26 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10022879 [exp] 243 / 2e-73 AT5G43990 455 / 2e-149 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10024946 [exp] 233 / 6e-70 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257400 [exp] 101 / 3e-23 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.014G192500 [exp] 69 / 2e-12 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF10440 [flax] [poplar] WIYLD Ubiquitin-binding WIYLD domain
Representative CDS sequence Show only first row Show all	>Lus10024947 pacid=23178852 polypeptide=Lus10024947 locus=Lus10024947.g ID=Lus10024947.BGIv1.0 annot-version=v1.0 ATGCTGCCGAATCCCAGAGTGGGGAAGGCCTTCAAGGCAATGACGGAGCTCGGGTTCGATGCAGGTGTAGTGAAGCTTGTATTGAGAAGACTTGGGAAGT TGTACAGCAAAAGCTTCTCCTTGATTGAAGAAGATAACTACAGGGCTCTTGTTGATGCTATACTTGATGATATGGATGCAAAGGCAAGAGCACAGGAGAA GGAGAAGATTGTTGATGTAAGTGGGTCTATATTCCTTTTGGGGATTCTTAAGGGGGATTTGGATGAAGAACCCCAGCCATTGCTTAAACGTCCACTCCGT CAGCACGTAAGAGACCAAGAAGGGTTAGCAGTTTCTCCTGAAGATCCTACTGTAAGTACAGGCAGCCAGCCTCGTTCTGCTTGGAGAGATTCAGCTAACT TACCAGTTCCGAACGGAACTCTTCCATCCGAGCAATGCTTGCAACAGGAAGACGTACTTGTAACCAAAGGGAAAGATCCAATGCCGTCTCATGTTTCTCC GAGAAGTCGTAAGAGGCCTCTTGCAAGGAGAAGACAACTCGCCTTACGTATAATTGATCAACCAGCAAAGGGCACGGCTGCGGATTACTACTCCTTGATA GTACCTAAGGATGAGCCTCTCGACGAGCTTCCTCTTGCTGTTATAAGTCCAGATTGTAGTAACGAAAATCCGTCAGATGTTAGGGACATTGCAACTCAAG ATCAACCTGGTCAAGAAGAAGGCAATTGTTTGGTGAATTCAAGGGAGCTGCCACGGGTGAAGCAGCCCGGTGTTGGAAGCAACACCAATGGCTCCTCTTC TGAGTTGGAAATTGCTTCATCCTCTTCAGGAGAGGTGAAGTTATCTCTGAGCTTCCAACCTTTGCTTGGAAGGCCAAGTTTTCAGATGCCAGCTCTGGAT GAAGTGTTGAGATCAGTGAAGGAGAGATGTTCCCAGCATGGGTTACTTGGTGAGAACTTTTCTGTCTTGCCGATTTTAAAAGAAATGTGTCAGTGCTTCT TGGAATCGGCAACTGATCCCGATAACGAACCGACCAGAAGTATACGAGAGACCGATGCAACTAGGGGATGA
AA sequence Show only first row Show all	>Lus10024947 pacid=23178852 polypeptide=Lus10024947 locus=Lus10024947.g ID=Lus10024947.BGIv1.0 annot-version=v1.0 MLPNPRVGKAFKAMTELGFDAGVVKLVLRRLGKLYSKSFSLIEEDNYRALVDAILDDMDAKARAQEKEKIVDVSGSIFLLGILKGDLDEEPQPLLKRPLR QHVRDQEGLAVSPEDPTVSTGSQPRSAWRDSANLPVPNGTLPSEQCLQQEDVLVTKGKDPMPSHVSPRSRKRPLARRRQLALRIIDQPAKGTAADYYSLI VPKDEPLDELPLAVISPDCSNENPSDVRDIATQDQPGQEEGNCLVNSRELPRVKQPGVGSNTNGSSSELEIASSSSGEVKLSLSFQPLLGRPSFQMPALD EVLRSVKERCSQHGLLGENFSVLPILKEMCQCFLESATDPDNEPTRSIRETDATRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10024947 [exp]	0	1
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019394 [exp]	8.5	0.7942
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10023105 [exp]	18.1	0.7476
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	21.8	0.7509
AT3G59110			Protein kinase superfamily pro...		Lus10006544 [exp]	24.8	0.7436
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	31.5	0.7466
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10017785 [exp]	36.4	0.7256
AT3G48210			unknown protein		Lus10018093 [exp]	38.2	0.7318
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10019226 [exp]	38.6	0.7050
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019393 [exp]	38.7	0.7403
AT5G62280			Protein of unknown function (D...		Lus10041061 [exp]	42.9	0.6254

Compare expression of checked genes

Lus10024947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.