Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31980 149 / 2e-38 unknown protein AT3G50150 143 / 3e-37 Plant protein of unknown function (DUF247) (.1) AT3G50180 144 / 5e-37 Plant protein of unknown function (DUF247) (.1) AT3G50120 139 / 1e-35 Plant protein of unknown function (DUF247) (.1) AT3G50140 137 / 6e-35 Plant protein of unknown function (DUF247) (.1) AT3G50170 135 / 3e-34 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47200 134 / 6e-34 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50130 134 / 1e-33 Plant protein of unknown function (DUF247) (.1) AT3G50160 129 / 3e-32 Plant protein of unknown function (DUF247) (.1) AT5G22560 126 / 3e-31 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039780 [exp] 238 / 3e-73 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 207 / 3e-61 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 190 / 1e-54 AT4G31980 251 / 5e-76 unknown protein Lus10010065 [exp] 175 / 5e-49 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 167 / 3e-46 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 160 / 2e-43 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 153 / 5e-41 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 134 / 5e-34 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 133 / 7e-34 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146400 [exp] 227 / 3e-68 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.019G108400 [exp] 219 / 9e-66 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 213 / 7e-64 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.013G146600 [exp] 206 / 4e-61 AT4G31980 236 / 1e-70 unknown protein Potri.013G146300 [exp] 198 / 7e-58 AT4G31980 217 / 1e-63 unknown protein Potri.017G145100 [exp] 183 / 2e-52 AT4G31980 225 / 1e-66 unknown protein Potri.004G187100 [exp] 171 / 2e-47 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.003G206201 [exp] 167 / 3e-46 AT4G31980 281 / 7e-88 unknown protein Potri.003G206101 [exp] 166 / 5e-46 AT4G31980 253 / 2e-77 unknown protein Potri.018G029800 [exp] 159 / 2e-43 AT4G31980 317 / 1e-101 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10024948 pacid=23178914 polypeptide=Lus10024948 locus=Lus10024948.g ID=Lus10024948.BGIv1.0 annot-version=v1.0 ATGGCAGCAAGTTCATCAACAATGGCTCTATGGAAAGTACCGATGCAAGAATCTGATTGGGAAGGAGATGGAGGGTATGCAGAGATAGAACGTATGCAAG AAGCCGTTTTTGAAGGAGATGGAGGGTTCAGGACAAGAAGAGAAGATACAGTGGTCAGAGAGCCGCTTCAAAATTTGCCCCTGAATGACACCCAACACCA GATAATCGACATGGTGTCCCTGAAACGCACATCTGCTATGCTGCAGAACAATGTAACCAGATCGACAATGTTCCGTGTTCCCCAGTCGATGCACCAAGTC AACCCACTTGCTTACACTCCTCAGTTTGTCTCCATTGGGCCATTCCACTATGGAAACTTCAATACGCTAGCCATGGAGGACTACAAGAGAGTGTTCATGT TACGTATTCTGGAACAGACATCACAGCCAGATAGTACTCTGCGCATATGCCAAGATGCTGTTTATGAAATGATGGACGACGTACTTGACTGCTATTTTTC AAAGATCGACATCTCATGGGAGCTGCTGGCTAACATTATCCTGGTCGATTCTTGCTTTCTGCTCCAAGTCTTCTTCTTAAACAGCAATATCAAGCCCTTT GGCGATGTTCACATGGATAACAACTACAAGCAAATGCTGAATTCAGGCATCCGTCGTGACCTGGCACTGCTTGAGAATCAACTCCCTTTCTTCGTTCTAG AAAAGCTCTTGTCAATCTTCAAGGGGAGTTTGGTAATCCGCCTTCCAGACAACACCAGCCTGAATGAGCTTGCATTCAATGTATTCAAAAGTGACTTGAA CATCCAGGGATCCTTAACAGTACCACCTGCGGACCAAAATTATAAGCATTTGCTTGATCTCATAGCCAAGTGTGCAAGTCCTTCATCCTCACCTACTATC CAGCCATATGTCCAGCCACCTCTTAGGGATTTACAGGTTGTGCATCTACGCAATGCTAAAAAGCTCCGAGAAGTAGGAATAAAGTTCGAAGCAGCAGGGG AGAGCGCGTTGCTTGAACTGGAATTCATCAATGGTGTTTTCAAAATCCCACCATTTGTGATCAATGAATGCACCGAGTCGTTGTTGAGAAACCTCGTAGC TTTTGAGTTCAGCTCCAAGGATCTACTAACTGATTCACACGAGTACTTTGCATCATATGTATTCTTAATGGAGCGCCTTGTCAGTAATGAAGAAGACCTG GAACTACTGGAGAGCGAAGGGATTCTCATCAACCAGCTTGGAGGCAGAGAGGACGCCACCAAGATCTTCCGCAACATCAGCAAGAATTTCGTCCTCAAGA AGTTTTACTTTGGTGAGTTTTGCTGTGCCGTTGAAGCACACTGTCGCTCTAGGAGACATCGTTACCTGCAAGACCTGCAAAGGCATTACCTGAAGAATCC ATGGACAACGTTGTCGGTGTTTGCTGCTAGTATCCTCCTCGTCCTCACTGCCATCCAGACCTATTATAGTTACGCCGGTTATGTGCATCGTCAGTGA
AA sequence Show only first row Show all	>Lus10024948 pacid=23178914 polypeptide=Lus10024948 locus=Lus10024948.g ID=Lus10024948.BGIv1.0 annot-version=v1.0 MAASSSTMALWKVPMQESDWEGDGGYAEIERMQEAVFEGDGGFRTRREDTVVREPLQNLPLNDTQHQIIDMVSLKRTSAMLQNNVTRSTMFRVPQSMHQV NPLAYTPQFVSIGPFHYGNFNTLAMEDYKRVFMLRILEQTSQPDSTLRICQDAVYEMMDDVLDCYFSKIDISWELLANIILVDSCFLLQVFFLNSNIKPF GDVHMDNNYKQMLNSGIRRDLALLENQLPFFVLEKLLSIFKGSLVIRLPDNTSLNELAFNVFKSDLNIQGSLTVPPADQNYKHLLDLIAKCASPSSSPTI QPYVQPPLRDLQVVHLRNAKKLREVGIKFEAAGESALLELEFINGVFKIPPFVINECTESLLRNLVAFEFSSKDLLTDSHEYFASYVFLMERLVSNEEDL ELLESEGILINQLGGREDATKIFRNISKNFVLKKFYFGEFCCAVEAHCRSRRHRYLQDLQRHYLKNPWTTLSVFAASILLVLTAIQTYYSYAGYVHRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31980			unknown protein		Lus10024948 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10024348 [exp]	10.1	0.6746
AT2G28940			Protein kinase superfamily pro...		Lus10016536 [exp]	21.1	0.6706
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10043095 [exp]	27.4	0.6635
AT1G34570			Essential protein Yae1, N-term...		Lus10019775 [exp]	28.0	0.5971
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10009863 [exp]	28.7	0.6582
					Lus10025864 [exp]	36.3	0.6070
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	50.8	0.6391
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10032764 [exp]	53.6	0.6141
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10030751 [exp]	61.9	0.6118
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10037212 [exp]	64.6	0.5957

Compare expression of checked genes

Lus10024948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.