Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17940 127 / 6e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G20190 125 / 1e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04530 112 / 7e-28 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 111 / 1e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32340 103 / 2e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29670 80 / 7e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 77 / 4e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G47080 63 / 2e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022877 [exp] 501 / 1e-178 AT4G17940 121 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023721 [exp] 157 / 4e-43 AT1G04530 171 / 4e-49 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014468 [exp] 157 / 6e-43 AT1G04530 177 / 1e-51 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000257 [exp] 152 / 5e-41 AT1G04530 179 / 3e-52 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030103 [exp] 130 / 1e-34 AT5G20190 179 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002166 [exp] 129 / 5e-34 AT5G20190 192 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002013 [exp] 108 / 1e-26 AT4G32340 152 / 5e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043266 [exp] 106 / 4e-26 AT5G20190 162 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019409 [exp] 105 / 8e-26 AT5G20190 164 / 1e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G256900 [exp] 200 / 6e-60 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G065400 [exp] 150 / 4e-41 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G172200 [exp] 150 / 3e-40 AT1G04530 137 / 1e-36 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130100 [exp] 125 / 7e-33 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 125 / 1e-32 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 123 / 3e-32 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 113 / 3e-28 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G254300 [exp] 105 / 5e-26 AT4G32340 157 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G250100 [exp] 78 / 3e-15 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044200 [exp] 72 / 2e-13 AT2G29670 484 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024949 pacid=23178840 polypeptide=Lus10024949 locus=Lus10024949.g ID=Lus10024949.BGIv1.0 annot-version=v1.0 ATGGAATTTTCTCTATTGCTGCAGACAGTTCAATTCTCCACCGCACAAGCTCCCTTCAACAACAACATCTTCCCACCCAACTTCCTTTCCTTCTCTCTAG CTGTACTCTGCTCACCATCACTCGATATAAATCTCAGATCTTTTCCGTTTCCAGACTGTCAAAACTCAGATTCAGATACTGTTCATCATTCAAAGGCAGG CGAAACAATGCTGCTACGTAGCTCTTCAACTCCGATTCTTGGATCGCTTATCCCGTCCTTCAACGAAGGGACACCCAGTAATCACCATCATCACCATGAG ATTGGTAGCAGTAGTCCCAGTCTGTTCAAGCACCACCACCAATCCGTTGTTTCCAAGCGTTCTAACTACTGCCATTCCTCTCCCAGTATGTCTCCAGATC ATTCTTCCTCGTTCGGTAATGGCGGCGGGTTTCGCCGCGTGAGGTCTGATGGGAACTTGGAAGCACTCGCGGCTTACGACTGTGGTGGCGTCGGGAAAGA AGAACCTCACACGAATCATCTCCCTCCAAGGTTCCCAACTCGGATGCACACCAGGTGTTCGACATTGGACACGATCCCTTCTTTCTCGCTTTCCAGTTCT GGAACCCGACAAGAAGAGGATCTGGAGGAGGAAGATGATGATGAGGAGGAGGATGGTGTGGCAACTGGTCGTGCTAATTCAGGGTTGATTGATGATTTGA AGGTGGATGCTATGGTGGGGAGTATTGGTTATGGTAGGGATGAGATGCATATTGCTAGTGGTCTTGGGATTCAGCTGATTGCTAGCTATAATGGTGGTGA AGGTGGTGGTGGGAAGGGTGGAAATGGCGGCCTTGGAGGCGGAGGAGGTTATAATCCGGCTGACGGAGACGGTGGAGATATGCAAGGGACGGAGGAGTAC TACAAGAGGATGGTAGTGGAGAACCCTGGAGACTCTTTGTTCTTGAGGAACTATGCTCACTTCTTGCATCAGACAAAGAAGGATCTGAAGGGAGCAGAGG AGTATTACTCGCGAGCAATCTTGGTCGATCCAAGCGATGGAGATATCCTTTCGCAGTATGCAAAGTTGGTATGGGAGCTTCACCGCGATGAAGACAGAGC CTCTGCCTACTTTGAGCGTTCAGTTCAAGCCTCTCCTCATGATTGCCATGTACATGCAGCGTATGCGAGCTTTCTGTGGGAAGTAGATCAAGATGATGTG CCTGTAGAGTTGGATGCGATATCCATGCATCAGCATTACCCCAAGAGCTCCATGGCATCTGCAGGAGCTTAA
AA sequence Show only first row Show all	>Lus10024949 pacid=23178840 polypeptide=Lus10024949 locus=Lus10024949.g ID=Lus10024949.BGIv1.0 annot-version=v1.0 MEFSLLLQTVQFSTAQAPFNNNIFPPNFLSFSLAVLCSPSLDINLRSFPFPDCQNSDSDTVHHSKAGETMLLRSSSTPILGSLIPSFNEGTPSNHHHHHE IGSSSPSLFKHHHQSVVSKRSNYCHSSPSMSPDHSSSFGNGGGFRRVRSDGNLEALAAYDCGGVGKEEPHTNHLPPRFPTRMHTRCSTLDTIPSFSLSSS GTRQEEDLEEEDDDEEEDGVATGRANSGLIDDLKVDAMVGSIGYGRDEMHIASGLGIQLIASYNGGEGGGGKGGNGGLGGGGGYNPADGDGGDMQGTEEY YKRMVVENPGDSLFLRNYAHFLHQTKKDLKGAEEYYSRAILVDPSDGDILSQYAKLVWELHRDEDRASAYFERSVQASPHDCHVHAAYASFLWEVDQDDV PVELDAISMHQHYPKSSMASAGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17940			Tetratricopeptide repeat (TPR)...		Lus10024949 [exp]	0	1
AT5G58070		ATTIL	temperature-induced lipocalin ...		Lus10036298 [exp]	1.4	0.8613
AT3G60520			unknown protein		Lus10028179 [exp]	1.7	0.8815
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023213 [exp]	10.7	0.8524
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10019526 [exp]	14.6	0.8414
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10019490 [exp]	15.3	0.8048
AT4G22240			Plastid-lipid associated prote...		Lus10014790 [exp]	16.7	0.8318
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10032756 [exp]	18.3	0.8357
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10000462 [exp]	18.8	0.8403
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Lus10034214 [exp]	24.2	0.8176
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10010880 [exp]	26.7	0.8049

Compare expression of checked genes

Lus10024949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.