Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43970 92 / 2e-25 ATTOM22-V, TOM22-V, TOM9-2 TRANSLOCASE OUTER MITOCHONDRIAL MEMBRANE 22-V, translocase of outer membrane 22-V (.1) AT1G04070 89 / 3e-24 ATTOM22-I, TOM22-I translocase of outer membrane 22-I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022876 [exp] 174 / 7e-58 AT5G43970 113 / 5e-34 TRANSLOCASE OUTER MITOCHONDRIAL MEMBRANE 22-V, translocase of outer membrane 22-V (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257200 [exp] 121 / 5e-37 AT5G43970 98 / 5e-28 TRANSLOCASE OUTER MITOCHONDRIAL MEMBRANE 22-V, translocase of outer membrane 22-V (.1) Potri.014G192601 [exp] 116 / 3e-35 AT5G43970 98 / 4e-28 TRANSLOCASE OUTER MITOCHONDRIAL MEMBRANE 22-V, translocase of outer membrane 22-V (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04281 [flax] [poplar] Tom22 Mitochondrial import receptor subunit Tom22
Representative CDS sequence Show only first row Show all	>Lus10024950 pacid=23178849 polypeptide=Lus10024950 locus=Lus10024950.g ID=Lus10024950.BGIv1.0 annot-version=v1.0 ATGGCAGCTCAGTCATCCAGAGGCGGAGTCTCGCTCCCCGACAAGAGAGCTTCTTCTTCCAAGCGTCAACTGCCGGATTCCGGAACCATCCTCGCCAAGT TCAGCAACTCCCAGATCGTCTCAGTGGGTAAGCGAGTCGCCTCCGACACCGCTTACGTCACCAAGAGGCTCCTCCGCAGCACAGGGAAGGCGGCCTGGAT CGCTGGGACCACGTTCTTGGTATTGGCGGTGCCGCTGATCATCGAGATGGACCGGGAGCAGCAGTTCACCGAGCTCGAGCTCCAGCAGCAGAGCCTCCTC GGACCTCCGCCGGTTGTTGCGGCCCAGAAGTAG
AA sequence Show only first row Show all	>Lus10024950 pacid=23178849 polypeptide=Lus10024950 locus=Lus10024950.g ID=Lus10024950.BGIv1.0 annot-version=v1.0 MAAQSSRGGVSLPDKRASSSKRQLPDSGTILAKFSNSQIVSVGKRVASDTAYVTKRLLRSTGKAAWIAGTTFLVLAVPLIIEMDREQQFTELELQQQSLL GPPPVVAAQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10024950 [exp]	0	1
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10011434 [exp]	2.6	0.9284
AT3G49910			Translation protein SH3-like f...		Lus10018139 [exp]	4.0	0.9563
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10011459 [exp]	6.3	0.9237
AT4G29830		VIP3	vernalization independence 3, ...		Lus10017159 [exp]	6.6	0.9431
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Lus10035432 [exp]	6.7	0.9242
AT2G15000			unknown protein		Lus10020971 [exp]	7.2	0.8895
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	8.9	0.9304
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10035211 [exp]	9.2	0.9409
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	9.4	0.9264
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10032045 [exp]	10.9	0.9164

Compare expression of checked genes

Lus10024950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.