Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04080 799 / 0 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT5G46400 411 / 4e-129 ATPRP39-2 ,AT PRP39-2 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G17760 67 / 5e-11 CSTF77, ATCSTF77 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G24270 55 / 2e-07 EMB140 EMBRYO DEFECTIVE 140 (.1.2) AT5G41770 54 / 6e-07 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 49 / 1e-05 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G13210 48 / 3e-05 crooked neck protein, putative / cell cycle protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022874 [exp] 1306 / 0 AT1G04080 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10015257 [exp] 375 / 1e-115 AT5G46400 384 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025377 [exp] 239 / 1e-67 AT5G46400 392 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034294 [exp] 59 / 1e-08 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10003684 [exp] 59 / 2e-08 AT1G17760 971 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041477 [exp] 57 / 7e-08 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10005168 [exp] 51 / 5e-06 AT4G24270 764 / 0.0 EMBRYO DEFECTIVE 140 (.1.2) Lus10028994 [exp] 48 / 4e-05 AT1G17760 957 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G192800 [exp] 954 / 0 AT1G04080 820 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.002G257100 [exp] 947 / 0 AT1G04080 874 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.003G106200 [exp] 62 / 2e-09 AT1G17760 1037 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G094400 [exp] 52 / 2e-06 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024952 pacid=23178829 polypeptide=Lus10024952 locus=Lus10024952.g ID=Lus10024952.BGIv1.0 annot-version=v1.0 ATGGCAGACAGTGACGCAGCGGTTTCTGGGTCAGCCACTGTTACCGAGTATGCATCTGCTGGATTTAGCAACACGATCCCTAGCTCAGATGCTTATGCTG CGGGTACTGCTGAAGCTTATGGTGTAAATGCAGCGGGTGGCAGTGCATATGGTGCAAATTCTGATTCTGTTATGCATGACGCCCATGGCAATGCTTATGA TGCCAAGACTGTTGCTGCGGAGAATGCAGCTGCCCCCCAGCCACCTACTTACTCATCCGCAAATGGGAATATTGGTAGTGCAGGTGAAACTGTTGCATCA GTTGAAAATGGGGGTTCTGCAGAAGATGCTAGTGCATCCGCTATGAAGCAACAGTTACTAGATGGTTCTGTTCCTGCTTCATCACCCGAGGAGGATCGGT TGTGGAACATTGTCAGAGCTAATTCATTGGATTTTGATGCTTGGACTGCATTGATTGATGAAACAGAGAAGGTTGCATGGGACAAAATACCAAAAATAAG GACTGTCTATGATGCATTTTTAGGTGAATTTCCTCTATGCTATGGCTATTGGAAAAAGTATGCTGATCACGAGGCACGGCTTGGTGACATGGACAAAGTG GTTGAGGTATATGAGCGAGCTGTTCTTGGCGTGACATATTCAGTGGATATTTGGTTGCATTATTGCACATTCGCCATTAGTACTTATGGGGATCCAGAAA CTATTAGAAGGCTTTTTGAACGGGGTTTAACCTACGTCGGAACAGATTATTTATCTCATCCTCTCTGGGACAAATACATTGAATACGAGGAAATGCATTC AGAGTGGCCCCGTGTTGCAGCAATATACACCAGAATACTAGATATCCCAAATAAACGTCTAGATGAATATTTCAACAGATTTAAAGAGTTTGCTGCCAGT CGACCCCTGTCAGAATTGAGATCTGCGGAAGAAACTCCTGCTCCGCCTGAGAATGGCGACCAAGCAAGTGAAGAAGAGGTTCGCCCTGAGGATTCAGAGC TCTCCACTATGCCTGTGAGTGCTGGCTCAGAAGCAGAGGAGTTGGAGAAGTATACTGCAATCAGAGAGGAGCTATATAAGAAAGCTAAAGAGTTTGATTC TAAGATCTGTGACTTCGAAAATGCTATTAGGAGGCCCTACTTTCATGTGCGGCCCCTCAATGTTGCAGAGCTTGAAAACTGGCATAACTATCTGGACTTC ATGGAAGCACAAAATGATCTGAACAAGGTTGTAAAACTATATGAAAGATGCTTAATTGCCTGTGCAAATTATCCCGAGTATTGGATGCGCTATGTCCTGT GCATGGAAGCCTGTGGAAGTATGGATATTGCTGATAATGCTCTTGTTCGTGCAACTGACGTATTTGTGAAGAGACAACCAGATATCCATCTCTTTGCTGC CCGATTTAGAGAGCAGAATGCAGATATCCCTGGTGCCCGAGCAGCATACCAACGTGTGCATGCTGAAATTACACCTGGCCTCCTAGAAGCAATTATTAAG CATGCAAACATGGAACATCGACTGGGAACCCTTGAAGATTCCTTTTCTTTATACGAACAAGCCATTTCCATTGAGAAAGGAAAAGAGCAGTCTCAGGTGT TACCAATGCTGTATGCACAGTACTCTCGGTTCGTCTACCTGGCTTCTGGGAATGCAGAGAAAGCAAGGGAAATTTTGGCGACAGCTATTGATAATGTCCA ATTTTCAAAACCACTTCTTGAGGCATTCATACATCTGGAGTCAATTATGTCCCTTCCGAAGCGAATTGACCACTTAGACTCATTGGTTGACAAGTTCATT GCACCAAGTTTGGATAGTACTGCTAGTGCTGCTGAGCGGGAAGAGCTATCGTGTATTTTCCTAGAGTTCTTAAGTGTCTTCGGAGATGTACGATCAATAA AGAAGGCCGAAGACCGCCATGCGAAACTGTTCTTGCCCCATAGGAGCAAATCAGAGTTGAAAAAGCGTCATGCTGAGGATTACATGTCCTCAGATAAGAC CAAAGTTGCAAAGTCGTACGCTGATCCTGCAGCAGCTGCACAATCTGCAATGGGTGGCTACCCAGCCACCACACAAAACCAGTGGCCTGCTGGTTACACT GCACAACCTCAAGCTTGGCCTCAGGCTACTCAGTCTCCGGTTCAACAGTGGGGACCCGGATACACTCAACCAGCTGCGTATGGTGCATATGGAGGTGCGG CGTATGGGGGTGGCTACACCGCTCCCGCCCCACAGGCTCCCACATCTGTCCCGCCAACAGCTGCATATGGTGCTTATCCTCCGACGTACCCTGCCCAGTC GCAGCAGCAAGTAGCGGCCTACCCTCAACAGAGCTATGCTCAACCAACTGCGGCCGCAGCAGTCGTGCCGCCTGTTCAGCAGCCAGCTGCAGTTCCACAG CCCTACTACGGGGGAAGCTATTACTGA
AA sequence Show only first row Show all	>Lus10024952 pacid=23178829 polypeptide=Lus10024952 locus=Lus10024952.g ID=Lus10024952.BGIv1.0 annot-version=v1.0 MADSDAAVSGSATVTEYASAGFSNTIPSSDAYAAGTAEAYGVNAAGGSAYGANSDSVMHDAHGNAYDAKTVAAENAAAPQPPTYSSANGNIGSAGETVAS VENGGSAEDASASAMKQQLLDGSVPASSPEEDRLWNIVRANSLDFDAWTALIDETEKVAWDKIPKIRTVYDAFLGEFPLCYGYWKKYADHEARLGDMDKV VEVYERAVLGVTYSVDIWLHYCTFAISTYGDPETIRRLFERGLTYVGTDYLSHPLWDKYIEYEEMHSEWPRVAAIYTRILDIPNKRLDEYFNRFKEFAAS RPLSELRSAEETPAPPENGDQASEEEVRPEDSELSTMPVSAGSEAEELEKYTAIREELYKKAKEFDSKICDFENAIRRPYFHVRPLNVAELENWHNYLDF MEAQNDLNKVVKLYERCLIACANYPEYWMRYVLCMEACGSMDIADNALVRATDVFVKRQPDIHLFAARFREQNADIPGARAAYQRVHAEITPGLLEAIIK HANMEHRLGTLEDSFSLYEQAISIEKGKEQSQVLPMLYAQYSRFVYLASGNAEKAREILATAIDNVQFSKPLLEAFIHLESIMSLPKRIDHLDSLVDKFI APSLDSTASAAEREELSCIFLEFLSVFGDVRSIKKAEDRHAKLFLPHRSKSELKKRHAEDYMSSDKTKVAKSYADPAAAAQSAMGGYPATTQNQWPAGYT AQPQAWPQATQSPVQQWGPGYTQPAAYGAYGGAAYGGGYTAPAPQAPTSVPPTAAYGAYPPTYPAQSQQQVAAYPQQSYAQPTAAAAVVPPVQQPAAVPQ PYYGGSYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10024952 [exp]	0	1
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10038373 [exp]	1.0	0.9348
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10036234 [exp]	2.0	0.9128
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10037431 [exp]	2.2	0.8214
AT4G39680			SAP domain-containing protein ...		Lus10019680 [exp]	4.2	0.8683
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10003973 [exp]	4.9	0.8088
AT5G63120			P-loop containing nucleoside t...		Lus10019484 [exp]	7.7	0.7824
AT5G64600			O-fucosyltransferase family pr...		Lus10020882 [exp]	8.5	0.7879
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	10.8	0.7993
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	17.2	0.7306
AT5G63120			P-loop containing nucleoside t...		Lus10043334 [exp]	19.8	0.7086

Compare expression of checked genes

Lus10024952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.