Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49170 77 / 4e-18 unknown protein AT3G06840 62 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022872 [exp] 271 / 2e-94 AT5G49170 97 / 6e-26 unknown protein Lus10036097 [exp] 114 / 2e-32 AT5G49170 97 / 2e-25 unknown protein Lus10006495 [exp] 79 / 1e-18 AT5G49170 118 / 9e-34 unknown protein Lus10006494 [exp] 73 / 3e-16 AT3G06840 102 / 1e-27 unknown protein Lus10026782 [exp] 64 / 8e-14 ND 42 / 4e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G219500 [exp] 92 / 1e-23 AT3G06840 136 / 1e-40 unknown protein Potri.010G010600 [exp] 84 / 2e-20 AT3G06840 132 / 4e-39 unknown protein Potri.001G162100 [exp] 43 / 2e-05 AT3G06840 53 / 7e-09 unknown protein Potri.003G073200 [exp] 39 / 0.0004 AT3G06840 46 / 2e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024954 pacid=23178993 polypeptide=Lus10024954 locus=Lus10024954.g ID=Lus10024954.BGIv1.0 annot-version=v1.0 ATGGGAAGCAAAAGCAAAGCCCCAGTCTACCCAATGCCGCAACAAGACGACCTCCCTCCCCATTTCAGCGACTATGGCTTCGACCCACAAATCGATTACT TCCAGTTGATGGAAGAAGCGAGGAAGAAGCACAAGCGAGACGATTGCATCACGCGATTTAAGCTCCGGAATCCCATCACCAGAGACGAATCCTCATCCTG CCGTAAGACGACGTCGTTTAAGAAGAAGCGGTGGTGGAAGAAAGCGCTACCCTTCTTCAACCTCAAGAACTGGATTGTTCCTCGCCGGAGCAGCGGTGGG AAAGAGGAAGACGTTCATAGAGCTAGAGCTCGCGATTTCCGGTCCAGCCGAGCTTGTTCTTCCAGTCCGATGGATCTGGCGTACGTTAGCCTCAGAGAGC TTACCATGGAGCAGCAACAGCAGCAACATTGTCCTGTTAGTTGGTCGTCTGTCTCGATCCCCAAACAGGGGTTAGCTTTGAGATTCGGATTCGAACCCAA CGTTTGA
AA sequence Show only first row Show all	>Lus10024954 pacid=23178993 polypeptide=Lus10024954 locus=Lus10024954.g ID=Lus10024954.BGIv1.0 annot-version=v1.0 MGSKSKAPVYPMPQQDDLPPHFSDYGFDPQIDYFQLMEEARKKHKRDDCITRFKLRNPITRDESSSCRKTTSFKKKRWWKKALPFFNLKNWIVPRRSSGG KEEDVHRARARDFRSSRACSSSPMDLAYVSLRELTMEQQQQQHCPVSWSSVSIPKQGLALRFGFEPNV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49170			unknown protein		Lus10024954 [exp]	0	1
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Lus10028044 [exp]	3.2	0.9395
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10011330 [exp]	3.7	0.8964
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10024838 [exp]	5.7	0.9083
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10002526 [exp]	6.3	0.8958
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	6.5	0.9030
AT1G62760			Plant invertase/pectin methyle...		Lus10031132 [exp]	6.6	0.8919
AT3G53730			Histone superfamily protein (....		Lus10004949 [exp]	8.9	0.8938
AT1G06450			Polynucleotidyl transferase, r...		Lus10008043 [exp]	11.4	0.8851
AT1G31335			unknown protein		Lus10038328 [exp]	12.7	0.8958
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009652 [exp]	14.3	0.8889

Compare expression of checked genes

Lus10024954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.