Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43950 696 / 0 Plant protein of unknown function (DUF946) (.1) AT1G04090 666 / 0 Plant protein of unknown function (DUF946) (.1) AT3G04350 654 / 0 Plant protein of unknown function (DUF946) (.1) AT5G18490 633 / 0 Plant protein of unknown function (DUF946) (.1) AT2G44260 461 / 1e-157 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) AT2G44230 457 / 5e-156 Plant protein of unknown function (DUF946) (.1) AT3G01880 407 / 6e-136 Plant protein of unknown function (DUF946) (.1) AT3G01870 398 / 1e-132 Plant protein of unknown function (DUF946) (.1) AT1G48090 45 / 0.0002 calcium-dependent lipid-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022871 [exp] 1115 / 0 AT5G43950 693 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10027952 [exp] 659 / 0 AT3G04350 754 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10000813 [exp] 658 / 0 AT3G04350 761 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10017579 [exp] 467 / 7e-160 AT2G44260 553 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017580 [exp] 442 / 5e-150 AT2G44260 587 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10033542 [exp] 442 / 6e-149 AT2G44260 585 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017582 [exp] 427 / 1e-143 AT2G44260 582 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10003007 [exp] 53 / 6e-07 AT4G17140 3544 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10011036 [exp] 51 / 3e-06 AT4G17140 3546 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G193100 [exp] 759 / 0 AT5G43950 681 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.013G048300 [exp] 664 / 0 AT3G04350 755 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.018G087400 [exp] 506 / 4e-175 AT2G44260 691 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.001G232500 [exp] 506 / 7e-175 AT2G44260 729 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.009G025102 [exp] 503 / 1e-173 AT2G44260 746 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.002G256802 [exp] 221 / 1e-68 AT3G04350 210 / 1e-64 Plant protein of unknown function (DUF946) (.1) Potri.008G100600 [exp] 44 / 0.0004 AT1G48090 3782 / 0.0 calcium-dependent lipid-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06101 [flax] [poplar] Vps62 Vacuolar protein sorting-associated protein 62
Representative CDS sequence Show only first row Show all	>Lus10024955 pacid=23178875 polypeptide=Lus10024955 locus=Lus10024955.g ID=Lus10024955.BGIv1.0 annot-version=v1.0 ATGTTCGATTGCAAGTGTTTCCAGCGAAACAATTTGTTGAATTATGCGGCCTACGAACCTGATTCTTTCTCCCTGCCCGATCCTCTTCCCAATTGGCCTC CAGGGAAAGGATTTGCTTCTGGAAGAATAAGTTTATCATCCGAAATCGAAGTGATCAAGATTGCCAAGTTCCGATTCATATGGGGATATGGCTTTTCACA GGATAGGAAGAAAGGTCTTTCTTTCTATAAACCAATGGGAGTGCCTAGAGGATTTCATTGCTTGGGGCACTACTGTCAAGTTAATATGCATCCCGTTAAT GGATTCCTTCTTGTGGCTAGGGAGGTGGTGACTGGCAATGTTAGTTTACCTGCTCTTGCCAAGCCTGTTGATTACTCTCTAGTTTGGACTGCAGATGATC AACACGGCGAGGTATACGAAGGATGTGGCTTCTTCTGGTTACCTATAGCTCCCGCAGGTTATAAAGCCATGGGATTTCTGGTCACTAGCAATTCAGATAG ACCACAGCTGGATGAAGTGAGATGTGTCCGATCGGATTTGACAGATGAATGTCAAGCATATCGCAAAACATTGGACGTCTATTCTACAATAGTGAACTTT CCATTTCGAATTTGGAGCACAAGGCCTACTCACCGCGGAATCCACGGGAAAGGAGTTTGTGTTGGCACCTTTTTCTGCAGTAGCAGCTGGAAACCTGGTG AGGAGTTGAGTATTGCATGCTTAAAGAACTTAGATCCTAATTTGCACGCAATGCCGAACCTTGAACAGGTACATGCCCTTATTAACCATTATGGCCCTAG AGTTTACTTTCATCCCGATGAAGCTTACCTACCATCGTCAGTTTCGTGGTTTTTCAAAAATGGAGCACTCCTGTACACTGCCGACAGTTCAGCTGGTCTT CACATAGACATCAACGGCTCCAATCTGCCAAAAGGTGGGGTAAATGATGGAGAATTTTGGATAGACTTGCCAAATGGGGAACAAAGGAATTCTCTGAAGT TTGGAAACTTGGAGAGTGCTAAACTTTATGTTCATGTGAAGCCTGCATTTGGTGGGACATTCACTGATCTAGCAATGTGGGTCTTTTGCCCCTTCAATGG ACCAGCAACTCTGAAAATCGGACTCATGAGCTGCTCTTTAAGTAAGATAGGCCAGCATGTAGGTGACTGGGAGCATTTCACTCTCCGAATAAGCAACTTC GATGGCCAGCTTTGGGGTGTATACTTCTCTCAGCACAGCGGTGGCGAATGGGTTTTCGCTCACGAACTAGAGTACATAGAAGGCAACAAATCGATTGTTT ACTCGTCCAGGAACGGACATGCCAGCTACCCTCATCCGGGAATCTACATTCAGGGTTCTAAGAAGCTCGGAATTGGAATCAGGAACGATGCAATACGAAG CGACCGGTATGTAAATTCAAGCACTCAATATGAGATTGTAGCAGCAGAGTATCTTGGACTTGTTGAGCCTTGCTGGTTACAGTTCATGAGGAAATGGGGT CCAAGACTCGTCTATGATTCGAGAACCGAGCTCGACAAGATCGTCAAACGGTTGCCTATGAGACTAAGATGTCCTGTAGAGAATGTATTTGGTAAACTCC CTCTCGAGTTGTCCGGAGAAGATGGCCCGACGGGACCGAAAGAGAAGAACAATTGGGTAGGAGATGAGAGGTGGTGA
AA sequence Show only first row Show all	>Lus10024955 pacid=23178875 polypeptide=Lus10024955 locus=Lus10024955.g ID=Lus10024955.BGIv1.0 annot-version=v1.0 MFDCKCFQRNNLLNYAAYEPDSFSLPDPLPNWPPGKGFASGRISLSSEIEVIKIAKFRFIWGYGFSQDRKKGLSFYKPMGVPRGFHCLGHYCQVNMHPVN GFLLVAREVVTGNVSLPALAKPVDYSLVWTADDQHGEVYEGCGFFWLPIAPAGYKAMGFLVTSNSDRPQLDEVRCVRSDLTDECQAYRKTLDVYSTIVNF PFRIWSTRPTHRGIHGKGVCVGTFFCSSSWKPGEELSIACLKNLDPNLHAMPNLEQVHALINHYGPRVYFHPDEAYLPSSVSWFFKNGALLYTADSSAGL HIDINGSNLPKGGVNDGEFWIDLPNGEQRNSLKFGNLESAKLYVHVKPAFGGTFTDLAMWVFCPFNGPATLKIGLMSCSLSKIGQHVGDWEHFTLRISNF DGQLWGVYFSQHSGGEWVFAHELEYIEGNKSIVYSSRNGHASYPHPGIYIQGSKKLGIGIRNDAIRSDRYVNSSTQYEIVAAEYLGLVEPCWLQFMRKWG PRLVYDSRTELDKIVKRLPMRLRCPVENVFGKLPLELSGEDGPTGPKEKNNWVGDERW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43950			Plant protein of unknown funct...		Lus10024955 [exp]	0	1
AT5G43950			Plant protein of unknown funct...		Lus10022871 [exp]	1.4	0.8752
AT3G56580			RING/U-box superfamily protein...		Lus10001583 [exp]	2.0	0.8696
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10004703 [exp]	2.4	0.8699
AT5G49320			Protein of unknown function (D...		Lus10037723 [exp]	3.3	0.8804
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10001582 [exp]	4.9	0.8373
AT1G05170			Galactosyltransferase family p...		Lus10039657 [exp]	6.2	0.8360
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	10.0	0.8643
					Lus10005832 [exp]	12.1	0.7601
AT5G18610			Protein kinase superfamily pro...		Lus10041426 [exp]	14.4	0.8288
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	16.1	0.8561

Compare expression of checked genes

Lus10024955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.