Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03530 227 / 4e-65 ATNAF1 nuclear assembly factor 1 (.1) AT4G03380 53 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022870 [exp] 696 / 0 AT1G03530 274 / 3e-80 nuclear assembly factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G104400 [exp] 243 / 9e-72 AT1G03530 244 / 3e-70 nuclear assembly factor 1 (.1) Potri.013G145300 [exp] 243 / 1e-71 AT1G03530 280 / 2e-83 nuclear assembly factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF04410 [flax] [poplar] Gar1 Gar1/Naf1 RNA binding region
Representative CDS sequence Show only first row Show all	>Lus10024956 pacid=23178988 polypeptide=Lus10024956 locus=Lus10024956.g ID=Lus10024956.BGIv1.0 annot-version=v1.0 ATGGATGGAGATGAAGTTGAAGAGGGTGAAATCAGAGATGAGGGAGATAATCTGTTAGTTAGGAGTGACGATGAGGATGAGGAGGACGATGTGACAGATG AAGTGCACAAGATGGTTGAATGGAGTGATGTTGACGAGGAAGAAGATGGGGATGTTGGAGTTGAGAAGAGTCCTATTAGATCGAAGAATGAGTTCAAGGC CCTTCCACCTGTTCCTCCGGTCGATGCTGTCCTGCTACCACATCACGAAATGCAACCAGTTGGACTTGTCTCATCGGTTCTTGGTACGCAAGTCATCGTG GAAGGAGTGGAGAAGCACAACCCTCTAAATGAGGGCTCTATCATTTGGTTAACTGAGAAAAGATCGCCTCTGGGTCTGGTGGATGAAATTTTCGGACCTG TAAAGAATCCGTTCTATATAGTGAGATTCAATTCCGAAATTGAAGTTCCCGAGGGCCTTAGTAAAGGTACTTTGGTCTCCTTTGTTCCTGAGTTCGCCGG CTTTGTTCTGTCTAACCAAAACCTCTACAAGAAAGGATATGATGCTTCGGGTGAGAACGACGAGGAGTTGTCCGAGGAGATTGAGTTCTCAGACGATGAG AAAGAAGCAGAATACAGGAGAATGAAGAAAATGGTAAAGAGAGGGATGAATGGCCAGACAACAGTGGGAAACAAGAAAAGGAATAAGAAGAAGGCCGATG AGAGGCGTGGGGGAGACTGGAAGAACGATAACAACCCTTCATGGCAGCAAGCTGGAAATGATCCCGGTCAGCAACATACCACTAACGGGAATCAGCATAG CGCATCTCCGTGTCAACATGATCGAACTGATCCCGGTCAGCGGCATCCTCCCAATTCATTTCAGCAAGCTCAAACTGATCCGGGTCAGCAGCACCCTCCC AATGAAAATCAGCATCATCCTCCCAATGCAAATCAGCATCATCCTCCCAATGTAAATCAGCAGCATAACAATGTCTCTCCAGTTCAATCTTCAGCTGTCA TGGGACAAGGGATTAATAGTGGCAACAACCCATTCCTTCCACCGTTCCGGCCAATGTTGCAGCAGCAGAACCCGGGATTCTGCCCACCTCCGAACGGGAA TTGGCCAAATGGGTTGTTTCCCCAACATCAACAGAATCTAGCAGCACCTCATCAGTTTGGTGGTGGTTTCCCGGGTGGTAACATTCAGAATCCGTTGCAG ATGCAGATTCAAAGCTTGATGCAGCAGCTTCAGCAACAACTCAATGCTGGTAACGTAATGCTACCCGCCGGGCAGCCGAATTTCTTCCAAGCTCCTGATT TCATGCCTTGGCCAGCACCAGCAGGAGGAGGAATGATGAACCAAGGCGGCAGCTTCAACCAACCACCACCACCTCCATTTGGTATGAGCGGCTTTCTTCC TCAGCCTTCTGCCAACCCCGCCATGATGAACAACTCCATGAACATGGGAGACCAAGGAACGATGATGACCCCTGGCGTGCAACCACCGGCAAATGCTCCT GGCAGCGTTCAATCTCCTCAGCAGCAATCCGGAAACGGTCAGCAACAATCCGGAAACGGTCAGCAGCAATCTGGAAACGGTCAGCAGCAATCCGGAAATA GTCTTCCTCCTCGAAACTTCAACGCTGGTGGCGGTAATTCTTCGAATCGAGGAAGGAGGCCGTTCCATGGGAGAGGAGGTGGTCGGTTTAGAGGCAGGGG AGGCAGATAA
AA sequence Show only first row Show all	>Lus10024956 pacid=23178988 polypeptide=Lus10024956 locus=Lus10024956.g ID=Lus10024956.BGIv1.0 annot-version=v1.0 MDGDEVEEGEIRDEGDNLLVRSDDEDEEDDVTDEVHKMVEWSDVDEEEDGDVGVEKSPIRSKNEFKALPPVPPVDAVLLPHHEMQPVGLVSSVLGTQVIV EGVEKHNPLNEGSIIWLTEKRSPLGLVDEIFGPVKNPFYIVRFNSEIEVPEGLSKGTLVSFVPEFAGFVLSNQNLYKKGYDASGENDEELSEEIEFSDDE KEAEYRRMKKMVKRGMNGQTTVGNKKRNKKKADERRGGDWKNDNNPSWQQAGNDPGQQHTTNGNQHSASPCQHDRTDPGQRHPPNSFQQAQTDPGQQHPP NENQHHPPNANQHHPPNVNQQHNNVSPVQSSAVMGQGINSGNNPFLPPFRPMLQQQNPGFCPPPNGNWPNGLFPQHQQNLAAPHQFGGGFPGGNIQNPLQ MQIQSLMQQLQQQLNAGNVMLPAGQPNFFQAPDFMPWPAPAGGGMMNQGGSFNQPPPPPFGMSGFLPQPSANPAMMNNSMNMGDQGTMMTPGVQPPANAP GSVQSPQQQSGNGQQQSGNGQQQSGNGQQQSGNSLPPRNFNAGGGNSSNRGRRPFHGRGGGRFRGRGGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10024956 [exp]	0	1
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10029436 [exp]	3.0	0.8866
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10032072 [exp]	4.6	0.8911
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	9.6	0.8818
AT3G10110		MEE67	maternal effect embryo arrest ...		Lus10026848 [exp]	10.4	0.8358
AT3G15000			cobalt ion binding (.1)		Lus10032618 [exp]	11.0	0.8798
AT3G49910			Translation protein SH3-like f...		Lus10019283 [exp]	11.7	0.8892
AT1G79220			Mitochondrial transcription te...		Lus10031762 [exp]	14.7	0.8654
AT2G35390			Phosphoribosyltransferase fami...		Lus10040098 [exp]	16.1	0.8484
AT4G20020			unknown protein		Lus10035806 [exp]	18.4	0.8574
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	21.0	0.8735

Compare expression of checked genes

Lus10024956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.