Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20390 127 / 5e-38 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022869 [exp] 249 / 3e-86 AT2G20390 196 / 2e-64 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G256700 [exp] 168 / 4e-54 AT2G20390 195 / 8e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024957 pacid=23178899 polypeptide=Lus10024957 locus=Lus10024957.g ID=Lus10024957.BGIv1.0 annot-version=v1.0 ATGGAGAGAGCACGTAAGAACGAGGCAGTTAAAGAAGCTATCGGCGAACCAGTAACAAAAGGTGCATGGTACAACGCTTCGCTTGCAGTAGCTCACAAAA GGCAATCTGTTTCTTGTTCGTTTCCGGTCTCTGGACCACGTGGCGATGGAGTTGTACGGCTGAAAGCAGTTCGTAATCCAGATGACAACTGGTTGTCGTA TATCCTCCCTCGGGACTGGGAGATTGTGATTATGGATGCTCTCCTCCACATTCCGGGCAACGAAGGATCTGGCTCCTTAACGCAGCGGATCAGCCTATTG GACAGCTCTCCGCAAGCATGCCAGCCTTGCATGACTTGCCCAAGACCCCAAGAAACCCAGAAGACAGAAAGCAAATGA
AA sequence Show only first row Show all	>Lus10024957 pacid=23178899 polypeptide=Lus10024957 locus=Lus10024957.g ID=Lus10024957.BGIv1.0 annot-version=v1.0 MERARKNEAVKEAIGEPVTKGAWYNASLAVAHKRQSVSCSFPVSGPRGDGVVRLKAVRNPDDNWLSYILPRDWEIVIMDALLHIPGNEGSGSLTQRISLL DSSPQACQPCMTCPRPQETQKTESK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20390			unknown protein		Lus10024957 [exp]	0	1
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10018172 [exp]	11.6	0.7858
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10004197 [exp]	15.2	0.7474
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	19.4	0.7418
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	20.0	0.7579
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	22.6	0.7328
AT1G73240			unknown protein		Lus10026209 [exp]	24.3	0.7723
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	25.2	0.7670
AT4G27460			Cystathionine beta-synthase (C...		Lus10025651 [exp]	25.7	0.6774
AT4G24830			arginosuccinate synthase famil...		Lus10030725 [exp]	29.2	0.7586
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10024376 [exp]	34.1	0.7225

Compare expression of checked genes

Lus10024957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.