Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28640 151 / 4e-44 AUX_IAA IAA11 indole-3-acetic acid inducible 11 (.1.2.3) AT1G04100 141 / 4e-40 AUX_IAA IAA10 indoleacetic acid-induced protein 10 (.1) AT2G33310 134 / 2e-37 AUX_IAA IAA13 auxin-induced protein 13 (.1.2.3) AT1G04550 128 / 2e-35 AUX_IAA BDL, IAA12 indole-3-acetic acid inducible 12, BODENLOS, AUX/IAA transcriptional regulator family protein (.1.2) AT2G22670 110 / 7e-28 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT5G65670 102 / 7e-25 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT3G16500 98 / 2e-23 AUX_IAA IAA26, PAP1 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) AT4G29080 96 / 1e-22 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT3G23050 95 / 1e-22 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT1G51950 93 / 1e-21 AUX_IAA IAA18 indole-3-acetic acid inducible 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022868 [exp] 365 / 8e-127 AT4G28640 198 / 1e-62 indole-3-acetic acid inducible 11 (.1.2.3) Lus10014464 [exp] 144 / 2e-40 AT2G33310 231 / 4e-75 auxin-induced protein 13 (.1.2.3) Lus10023719 [exp] 142 / 2e-39 AT2G33310 223 / 4e-72 auxin-induced protein 13 (.1.2.3) Lus10034962 [exp] 113 / 7e-29 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10028222 [exp] 102 / 4e-25 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10042929 [exp] 103 / 8e-25 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2) Lus10012984 [exp] 100 / 8e-24 AT4G29080 280 / 8e-94 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10019241 [exp] 99 / 2e-23 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10002724 [exp] 98 / 3e-23 AT3G23050 212 / 5e-68 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G256600 [exp] 171 / 7e-51 AT4G28640 191 / 6e-60 indole-3-acetic acid inducible 11 (.1.2.3) Potri.010G065200 [exp] 159 / 2e-46 AT2G33310 243 / 4e-80 auxin-induced protein 13 (.1.2.3) Potri.008G172400 [exp] 153 / 4e-44 AT2G33310 246 / 4e-81 auxin-induced protein 13 (.1.2.3) Potri.003G051300 [exp] 101 / 2e-24 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.001G186100 [exp] 101 / 2e-24 AT4G29080 286 / 1e-95 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.005G053900 [exp] 99 / 3e-24 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.002G108000 [exp] 100 / 5e-24 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.006G161400 [exp] 100 / 8e-24 AT4G29080 293 / 2e-98 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.005G218300 [exp] 97 / 2e-23 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.002G044900 [exp] 95 / 9e-23 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10024958 pacid=23178828 polypeptide=Lus10024958 locus=Lus10024958.g ID=Lus10024958.BGIv1.0 annot-version=v1.0 ATGATATCGGCGGAGGACAACGTGGAGGACTCTTCCAGCCCTTACAGCTACGACGGCGGCGGCGGTGGCGAGGAGCTGGAGCTGGGACTCGGGTTGAGCA TCGGCGGCGCCCGGATGCTAGGGCGGTGTGATGGTGATGGTGATACTAGAGGGAATTCGACCAAGAAGAAGGAGGCTCAATTTCTGTACGCGAGGATCTT GACTGCTAAGGATTTCCCCAGCTGCGTGTTCCGTACTGCTACGACGTCTTCTTCAGCTGCTGCTTGTTCCTCGTCGTCGACAACCTCGTCGTCGTCTTCT ACTTTGAGCAGAGTCGGCGGCGGGACCAAGCGGAGTGCGGATTCCGCTGCGGGTGGTGCTTCTGCCGGCAGGCAAGTGGTCGGGTGGCCTCCGGTGAGGG CGTATAGAATGAACAGCATGGTTCATCAAGTTAGATCTGTGGCAACTGAAGACTATAACTCAATGGCTAAGAAGAATCAAAGCAAGGAGAGGGCAGTCGA CAACGCTGAATCCAGAAGCAATATGAATCTGATGGCTAGAAATTCGCTCTTTGTGAAGGTCAATATGGATGGAACTCCTATAGGAAGGAAGGTTGATCTG AATTCTCTCGGAACCTATGAAGCCTTAGCTCAAACGTTGGAAGATATGTTCCTAAAGCAGTCTCCAGTAAATGGTTCGAGCACAACTGAACGTAACACTG GCAGACGTCTGAAACTGCTGGATGGATCATCTGGATTTGTGATTACTTATGAAGACAAGGACGGAGATTGGATGCTTGTTGGGGATGTTCCTTGGGGAGG CTCAAGATCATGCGGACGACTGATGCAACCGGGCTCGGGAGCAAGGATGAAATATGATAGAACGACTCCACATCCTAAATCATCGATCACCCTCAGTAAC TACCGATGCATGGTTTCGATCCACGGATTTAGAAGAAACGGAGAGTTTGGGGTTACGTACGCAGATGCAGCAACCCCTATCTAG
AA sequence Show only first row Show all	>Lus10024958 pacid=23178828 polypeptide=Lus10024958 locus=Lus10024958.g ID=Lus10024958.BGIv1.0 annot-version=v1.0 MISAEDNVEDSSSPYSYDGGGGGEELELGLGLSIGGARMLGRCDGDGDTRGNSTKKKEAQFLYARILTAKDFPSCVFRTATTSSSAAACSSSSTTSSSSS TLSRVGGGTKRSADSAAGGASAGRQVVGWPPVRAYRMNSMVHQVRSVATEDYNSMAKKNQSKERAVDNAESRSNMNLMARNSLFVKVNMDGTPIGRKVDL NSLGTYEALAQTLEDMFLKQSPVNGSSTTERNTGRRLKLLDGSSGFVITYEDKDGDWMLVGDVPWGGSRSCGRLMQPGSGARMKYDRTTPHPKSSITLSN YRCMVSIHGFRRNGEFGVTYADAATPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Lus10024958 [exp]	0	1
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Lus10022868 [exp]	1.0	0.9532
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10002559 [exp]	6.6	0.9440
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10031416 [exp]	10.2	0.9240
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10018013 [exp]	11.4	0.9437
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10026499 [exp]	11.7	0.9413
AT1G21510			unknown protein		Lus10028651 [exp]	14.9	0.9383
AT2G43630			unknown protein		Lus10002105 [exp]	16.0	0.9264
AT5G63930			Leucine-rich repeat protein ki...		Lus10023680 [exp]	16.4	0.9046
AT2G04850			Auxin-responsive family protei...		Lus10001736 [exp]	20.5	0.9396
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10019929 [exp]	22.1	0.9341

Compare expression of checked genes

Lus10024958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.