Plant FIBer expression Database

Lus10024959 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28660 208 / 3e-69 PSB28 photosystem II reaction center PSB28 protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022867
[exp]
330 / 4e-117 AT4G28660 209 / 9e-70 photosystem II reaction center PSB28 protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G256400
[exp]
243 / 8e-83 AT4G28660 211 / 2e-70 photosystem II reaction center PSB28 protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03912 Psb28 Psb28 protein
Representative CDS sequence
>Lus10024959 pacid=23178907 polypeptide=Lus10024959 locus=Lus10024959.g ID=Lus10024959.BGIv1.0 annot-version=v1.0
ATGGCGGCGACTCTGCAATCTCTGGCATTAGCCTCTCCGGTCTCCCACCGCCGCCATTACCAGCAACCCAGAGCAGCTCTCTCAGCATTGCCGGCGCTTA
ATTGCTCAAAATCCATCTCCCGTGGCCAATCTTTGGGCCTACCTTCAACCAAAAGGAAGTCTCGGTCTTCATCATCTTCTTCATCTGGGTTTGTTGTGAG
GATGATGGCGAAGCCGTCGATCCAGTTCATCCAAGGAACAGACGAGCAGACGGTGCCGGATGTGAAGCTGACCAAATCAAGGGACGGCACAAACGGCGTC
GCATTGTTCAGCTTCGACCAGCCTTCCGTGTTCGACTCTTCAGGTGAGCTTGGTGACATCACTGGCTTCTTCATGATTGACGAGGAAGGAGTTCTACAAT
CGGTCGATGTAAGTGCCAAATTTGTGAATGGGAAACCGTCTCGAATCGAGGCCAAGTATGTGATGCGGAATCCGAGAGAATGGGATAGGTTCATGAGGTT
CATGGAGAGATATGCTAATGCCAATGGCTTGCAGTTCGTCAAGAAATGA
AA sequence
>Lus10024959 pacid=23178907 polypeptide=Lus10024959 locus=Lus10024959.g ID=Lus10024959.BGIv1.0 annot-version=v1.0
MAATLQSLALASPVSHRRHYQQPRAALSALPALNCSKSISRGQSLGLPSTKRKSRSSSSSSSGFVVRMMAKPSIQFIQGTDEQTVPDVKLTKSRDGTNGV
ALFSFDQPSVFDSSGELGDITGFFMIDEEGVLQSVDVSAKFVNGKPSRIEAKYVMRNPREWDRFMRFMERYANANGLQFVKK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G28660 PSB28 photosystem II reaction center... Lus10024959
[exp]
0 1
AT4G28660 PSB28 photosystem II reaction center... Lus10022867
[exp]
1.0 0.9615
AT2G40490 HEME2 Uroporphyrinogen decarboxylase... Lus10012892
[exp]
2.4 0.9271
AT3G04790 EMB3119 EMBRYO DEFECTIVE 3119, Ribose ... Lus10009181
[exp]
4.9 0.9001
AT1G55670 PSAG photosystem I subunit G (.1) Lus10028806
[exp]
12.7 0.9058
AT1G60950 FED A, ATFD2, F... FERREDOXIN 2, 2Fe-2S ferredoxi... Lus10001369
[exp]
13.4 0.9032
AT4G00030 Plastid-lipid associated prote... Lus10020912
[exp]
13.9 0.8991
AT5G02120 PDE335, OHP PIGMENT DEFECTIVE 335, one hel... Lus10023782
[exp]
14.2 0.8993
AT1G60950 FED A, ATFD2, F... FERREDOXIN 2, 2Fe-2S ferredoxi... Lus10015462
[exp]
16.1 0.9026
AT2G33250 unknown protein Lus10023703
[exp]
17.0 0.8280
AT1G15820 CP24, LHCB6 light harvesting complex photo... Lus10020418
[exp]
19.9 0.8927

Lus10024959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.