Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 989 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 633 / 0 Subtilase family protein (.1) AT3G14240 629 / 0 Subtilase family protein (.1) AT5G67360 602 / 0 ARA12 Subtilase family protein (.1) AT5G51750 585 / 0 ATSBT1.3 subtilase 1.3 (.1) AT3G14067 581 / 0 Subtilase family protein (.1) AT4G34980 576 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT1G01900 560 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 533 / 2e-179 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 499 / 5e-166 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022866 [exp] 1376 / 0 AT1G04110 1075 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10034900 [exp] 615 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 615 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 610 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10036546 [exp] 608 / 0 AT1G01900 822 / 0.0 subtilase family protein (.1) Lus10041382 [exp] 606 / 0 AT1G01900 825 / 0.0 subtilase family protein (.1) Lus10037449 [exp] 604 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 593 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 587 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G256300 [exp] 1139 / 0 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.006G141200 [exp] 624 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 624 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.012G131500 [exp] 621 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.001G163600 [exp] 618 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 613 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 608 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.015G133800 [exp] 600 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.001G167300 [exp] 598 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.003G118800 [exp] 593 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10024960 pacid=23178889 polypeptide=Lus10024960 locus=Lus10024960.g ID=Lus10024960.BGIv1.0 annot-version=v1.0 ATGGAGCCCAAGGTTCTTACCTTTTTACACGTTCTGTTATCTTTCACAGTACTCTTGCTTCATGCAGCGAAGCCCCCTCTCGAAACCTACATTATTCAGC TCGACCCCAATGGTTCTTCTTCCTTTCGCTCCAAGATTCACTGGCACCTTTCCTTCCTTGACCAGCTTTCACTTTCAGATGATGATGATGAACAACATCC TTCTTCTTCATCCCGCCTTCTCTATTCTTACACGTCTGCGATGGAGGGTTTCGCTGCGCTGCTCTCCGATTCAGAGATGGAAAAGTTGAAGAAGCTGCCT GATGTTGTTTCCATTCGGCCTGACCAAAGCCTCCAGCTCCACACTACTTACTCCTACAAGTTCCTGGGGCTCACTCCTGCTAGGGACGATGCGTGGTATC AATCAGGATTCGGTCGTGGTGCCATAATTGGAGTTCTCGATACAGGAGTCTGGCCTGAGAGTCCGAGCTTCAACGACAAAGGGATGCCTCCTGTTCCAAG AAAGTGGAAAGGAATCTGTCAACAAGGCCAGGATTTTGATTCCTCGAACTGCAACCGGAAGCTCATCGGTGCAAGGTTCTTCACCAAAGGGCACAATGTA GCTTCTCCTTCATCGGCAGGAGTCGAAGAATATGCATCGCCTCGAGATTCCCATGGCCATGGAACGCACACTTCATCGACTTCCGGAGGCACTTCCGTTC CAATGGCTAGCGTGCTCGGAAATGGAGCAGGAGTTGCTCGAGGGATGGCTCCCGGAGCGCACATTGCGGTCTACAAAGTTTGCTGGACCAACGGCTGCTA CAGCTCTGATATTCTGGCCGCAATGGACACAGCTATCGTAGATGGAGTCGACATACTGTCCCTCTCAATAGGAGGATTCCCATTACCACTCTACGGAGAC AGCATAGCAATCGGCAGCTTTCGAGCAATGGAGCACGGGATATCAGTAATATGCGCAGCAGGAAACAGCGGTCCTCTCCAATATTCAGTTGCCAATGAAG CTCCATGGATTGCTACCATAGGAGCAAGCACACTTGACAGGAGTTTCCCAGCTATAGTTCGACTCGGAAATGGAGAGTACCTCTACGGAGAGTCCATGTA TCCCGGAAACCAAGTTTCGAGCTCCACGAAGGAATTCGAACTAGTTTATGCATCTGGTAGCAAGAGAGGGACTGAATTCTGCTTTGCAGGCTCTCTTCCC AAGGGTAAGATCAAGGGCAAAATGGTTATTTGTGACCGAGGCGTTAATGGCAGGGCTGAAAAGGGCGAAGTTGTGAAGCAGTCTGGTGGTGCTGCAATGA TCCTAGCAAACACAGCAATCAACATGGAAGAAGATTCGGTCGATGTCCATGTATTGCCAGCAACGACAATCGGTTTCGCAGAATCGATCCGGTTGAAAAC TTACATCAACTCCACAACCAAGCCAACCGCTCGGATCGTGTTTGGTGGAACCGTGATTGGTAAAGCAAGAGCACCAGCAGTTGCGCAGTTTTCAGCCAGG GGACCGAGCTTCAGCAACCCTTTGGTGTTGAAACCGGATGTTATCGCACCGGGAGTCAATGTCATAGCAGCTTGGCCACAGAACCTGGGACCCACCGGTC TTCCGGAAGATTCTAGAAGAACGAATTTCACAGTTATGTCGGGGACATCCATGGCATGTCCCCATGTCAGCGGCATTGCTGCATTGATACGATCAGCTCA TCCGAAATGGAGCCCTGCCGCTGTCAAATCTGCAATCTTGACGACTGCAGAAGTGACTGACCATTCCGGAAACCCCATAATGGATGGAGACAAACCAGCT GGAGTTTTCGCCATGGGAGCCGGACATGTGAACCCGGAAAAGGCAATGAATCCGGGACTGGTGTATGATATCATGTCGGATGATTACGTCACTCATCTAT GCACACTTGGATACACAAGACTGGAGATTTTCACTATCACACATAAGAATGTTACCTGCGGCGAGTTGCTGAAGATGAACAAGGATGGTTTCAGCCTGAA TTACCCTTCCATCTCTGTGATGTTCAAGCAAGGAGGACCAGGGAGGAAGATGATCAGGAGGAGAGTGACTAACGTAGGCCAACCGAATTCCATCTACTCA GTGGAAGTCAAAGCTCCTCAGGGAGTGAAGATTCGAGTGAAACCGAGAAAGCTTGAGTTCAAGCAGAGAAACCAGGTTTTGAGTTATAAAGTGTGGTTCA TATCAAGGAAGAGAATTACAAAGGAGAAGCTAACTTTTGCAGAAGGACATCTGACATGGATAAACTCCGGAAACCATCTCACCAGGGTCAGAAGCCCCAT CTCAGTGACATGGAAGAGGAAATAA
AA sequence Show only first row Show all	>Lus10024960 pacid=23178889 polypeptide=Lus10024960 locus=Lus10024960.g ID=Lus10024960.BGIv1.0 annot-version=v1.0 MEPKVLTFLHVLLSFTVLLLHAAKPPLETYIIQLDPNGSSSFRSKIHWHLSFLDQLSLSDDDDEQHPSSSSRLLYSYTSAMEGFAALLSDSEMEKLKKLP DVVSIRPDQSLQLHTTYSYKFLGLTPARDDAWYQSGFGRGAIIGVLDTGVWPESPSFNDKGMPPVPRKWKGICQQGQDFDSSNCNRKLIGARFFTKGHNV ASPSSAGVEEYASPRDSHGHGTHTSSTSGGTSVPMASVLGNGAGVARGMAPGAHIAVYKVCWTNGCYSSDILAAMDTAIVDGVDILSLSIGGFPLPLYGD SIAIGSFRAMEHGISVICAAGNSGPLQYSVANEAPWIATIGASTLDRSFPAIVRLGNGEYLYGESMYPGNQVSSSTKEFELVYASGSKRGTEFCFAGSLP KGKIKGKMVICDRGVNGRAEKGEVVKQSGGAAMILANTAINMEEDSVDVHVLPATTIGFAESIRLKTYINSTTKPTARIVFGGTVIGKARAPAVAQFSAR GPSFSNPLVLKPDVIAPGVNVIAAWPQNLGPTGLPEDSRRTNFTVMSGTSMACPHVSGIAALIRSAHPKWSPAAVKSAILTTAEVTDHSGNPIMDGDKPA GVFAMGAGHVNPEKAMNPGLVYDIMSDDYVTHLCTLGYTRLEIFTITHKNVTCGELLKMNKDGFSLNYPSISVMFKQGGPGRKMIRRRVTNVGQPNSIYS VEVKAPQGVKIRVKPRKLEFKQRNQVLSYKVWFISRKRITKEKLTFAEGHLTWINSGNHLTRVRSPISVTWKRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10024960 [exp]	0	1
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10034031 [exp]	4.2	0.9183
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10038158 [exp]	7.7	0.9035
AT1G64510			Translation elongation factor...		Lus10023054 [exp]	8.1	0.9224
AT2G43030			Ribosomal protein L3 family pr...		Lus10013640 [exp]	16.7	0.9131
AT1G29070			Ribosomal protein L34 (.1)		Lus10013928 [exp]	16.7	0.9136
AT3G51870			Mitochondrial substrate carrie...		Lus10027789 [exp]	18.4	0.9063
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10021376 [exp]	18.5	0.8753
AT2G43030			Ribosomal protein L3 family pr...		Lus10001337 [exp]	21.1	0.9122
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	22.6	0.9130
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10011170 [exp]	22.8	0.9071

Compare expression of checked genes

Lus10024960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.